Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   N7K38_RS00815 Genome accession   NZ_CP104762
Coordinates   163730..164779 (+) Length   349 a.a.
NCBI ID   WP_010747260.1    Uniprot ID   R2RE67
Organism   Enterococcus raffinosus strain ATCC 49464     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 158730..169779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7K38_RS00795 (N7K38_00795) ymfI 159538..160263 (+) 726 WP_010747264.1 elongation factor P 5-aminopentanone reductase -
  N7K38_RS00800 (N7K38_00800) - 160696..161562 (+) 867 WP_010747263.1 RodZ domain-containing protein -
  N7K38_RS00805 (N7K38_00805) pgsA 161597..162178 (+) 582 WP_010747262.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  N7K38_RS00810 (N7K38_00810) cinA 162359..163606 (+) 1248 WP_010747261.1 competence/damage-inducible protein A Machinery gene
  N7K38_RS00815 (N7K38_00815) recA 163730..164779 (+) 1050 WP_010747260.1 recombinase RecA Machinery gene
  N7K38_RS00820 (N7K38_00820) rny 165023..166579 (+) 1557 WP_010747259.1 ribonuclease Y -
  N7K38_RS00825 (N7K38_00825) mprF 166737..169298 (+) 2562 WP_010747258.1 bifunctional lysylphosphatidylglycerol flippase/synthetase MprF -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 37382.53 Da        Isoelectric Point: 4.8948

>NTDB_id=732091 N7K38_RS00815 WP_010747260.1 163730..164779(+) (recA) [Enterococcus raffinosus strain ATCC 49464]
MANDRKAALDAAMKKIEKNYGKGSIMKLGEKVDQQISTIPSGSLALDVALGVGGYPRGRIIEVYGPESSGKTTVALHAIA
EVQKHGGTAAFIDAEHALDPQYAQRLGVNIDELLLSQPDTGEQGLEIADALVSSGAVDIIVIDSVAALVPRAEIDGEMGD
AHVGLQARLMSQALRKLSGSINKTKTIAVFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRAEQLKNGTDIVGNR
TKIKVVKNKVAPPFKVAEVDIMYGLGISQEGELLDMAVEQDIIDKSGAWYGYKEDRIGQGRENAKKYLADHPEMMAEVAT
RVRAAYGIGDDAAAADAEEAGQEELPLDE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=732091 N7K38_RS00815 WP_010747260.1 163730..164779(+) (recA) [Enterococcus raffinosus strain ATCC 49464]
TTGGCAAATGATCGCAAGGCAGCTTTAGATGCTGCAATGAAGAAGATTGAAAAGAATTATGGTAAAGGTTCGATCATGAA
GTTAGGTGAGAAGGTCGATCAACAAATTTCAACGATTCCGAGTGGCTCTTTGGCATTGGACGTTGCGTTAGGTGTTGGCG
GGTACCCTCGCGGACGAATCATTGAAGTATACGGACCAGAAAGTTCTGGTAAAACAACGGTGGCATTACATGCCATCGCG
GAAGTCCAAAAGCATGGTGGTACCGCAGCCTTTATCGATGCTGAACATGCGTTGGATCCTCAATACGCACAGCGTTTAGG
TGTAAATATCGATGAGCTGCTGCTTTCACAGCCAGATACTGGTGAGCAAGGTCTAGAGATCGCTGATGCATTAGTTTCCA
GTGGCGCTGTTGATATCATCGTTATCGACTCAGTAGCGGCTTTAGTACCGCGTGCCGAGATCGATGGAGAGATGGGAGAC
GCTCACGTTGGTTTGCAAGCACGTTTGATGTCTCAAGCGTTACGTAAGTTGTCTGGTTCGATTAACAAAACCAAAACAAT
CGCGGTCTTCATCAACCAAATTCGTGAAAAAGTCGGCGTAATGTTTGGGAACCCTGAAACAACTCCTGGTGGACGCGCGT
TGAAATTCTACGCAACAGTTCGTTTAGAAGTACGTCGTGCAGAGCAATTGAAGAATGGGACTGACATTGTCGGCAACCGC
ACGAAGATCAAAGTTGTTAAGAACAAGGTAGCGCCGCCATTCAAGGTAGCCGAAGTCGATATTATGTACGGACTTGGGAT
TTCACAAGAGGGCGAATTGCTGGATATGGCTGTTGAACAAGACATCATTGATAAGAGTGGTGCTTGGTATGGCTATAAAG
AAGATCGTATCGGTCAAGGGCGTGAGAACGCGAAGAAATATTTGGCTGATCATCCAGAAATGATGGCCGAAGTTGCTACT
CGTGTCAGAGCTGCGTACGGTATTGGCGACGATGCGGCAGCAGCAGATGCTGAAGAAGCAGGACAAGAAGAATTGCCTTT
AGATGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB R2RE67

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

82.779

94.842

0.785

  recA Bacillus subtilis subsp. subtilis str. 168

76.9

94.269

0.725

  recA Streptococcus pneumoniae R6

68.056

100

0.702

  recA Streptococcus pneumoniae TIGR4

68.056

100

0.702

  recA Streptococcus pneumoniae D39

68.056

100

0.702

  recA Streptococcus pneumoniae Rx1

68.056

100

0.702

  recA Streptococcus mitis SK321

68.82

100

0.702

  recA Streptococcus mitis NCTC 12261

68.539

100

0.699

  recA Streptococcus pyogenes NZ131

69.789

94.842

0.662

  recA Lactococcus lactis subsp. cremoris KW2

67.857

96.275

0.653

  recA Streptococcus mutans UA159

68.468

95.415

0.653

  recA Glaesserella parasuis strain SC1401

58.689

100

0.59

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.691

93.696

0.587

  recA Ralstonia pseudosolanacearum GMI1000

62.963

92.837

0.585

  recA Neisseria gonorrhoeae strain FA1090

61.398

94.269

0.579

  recA Neisseria gonorrhoeae MS11

61.398

94.269

0.579

  recA Neisseria gonorrhoeae MS11

61.398

94.269

0.579

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.909

94.556

0.576

  recA Pseudomonas stutzeri DSM 10701

61.42

92.837

0.57

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.486

94.269

0.57

  recA Vibrio cholerae strain A1552

61.3

92.55

0.567

  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.3

92.55

0.567

  recA Acinetobacter baumannii D1279779

60.991

92.55

0.564

  recA Acinetobacter baylyi ADP1

60.372

92.55

0.559

  recA Helicobacter pylori 26695

58.769

93.123

0.547

  recA Helicobacter pylori strain NCTC11637

58.769

93.123

0.547