Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   N5P13_RS06410 Genome accession   NZ_CP104736
Coordinates   1380491..1381540 (-) Length   349 a.a.
NCBI ID   WP_004925639.1    Uniprot ID   A0A0A8JAA4
Organism   Acinetobacter baylyi strain JAT2091     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1375491..1386540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5P13_RS06375 (N5P13_06375) - 1375804..1376304 (+) 501 WP_004925653.1 OmpH family outer membrane protein -
  N5P13_RS06380 (N5P13_06380) lpxD 1376308..1377378 (+) 1071 WP_011182273.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -
  N5P13_RS06385 (N5P13_06385) fabZ 1377385..1377870 (+) 486 WP_026056961.1 3-hydroxyacyl-ACP dehydratase FabZ -
  N5P13_RS06390 (N5P13_06390) lpxA 1377867..1378655 (+) 789 WP_004925646.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  N5P13_RS06395 (N5P13_06395) - 1378715..1379542 (-) 828 WP_004925645.1 YbgF trimerization domain-containing protein -
  N5P13_RS06405 (N5P13_06405) - 1379954..1380433 (-) 480 WP_004925642.1 regulatory protein RecX -
  N5P13_RS06410 (N5P13_06410) recA 1380491..1381540 (-) 1050 WP_004925639.1 recombinase RecA Machinery gene
  N5P13_RS06415 (N5P13_06415) - 1381698..1382141 (-) 444 WP_004925636.1 RNA-binding S4 domain-containing protein -
  N5P13_RS06425 (N5P13_06425) - 1382754..1383614 (+) 861 WP_004925631.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  N5P13_RS06430 (N5P13_06430) - 1383671..1384405 (+) 735 WP_004925629.1 phosphoglycerate mutase family protein -
  N5P13_RS06435 (N5P13_06435) rpsT 1384463..1384732 (-) 270 WP_004925626.1 30S ribosomal protein S20 -
  N5P13_RS06440 (N5P13_06440) - 1384942..1385604 (+) 663 WP_004925623.1 nucleoside-diphosphate sugar epimerase -
  N5P13_RS06445 (N5P13_06445) rraA 1385620..1386132 (+) 513 WP_004925622.1 ribonuclease E activity regulator RraA -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 37815.20 Da        Isoelectric Point: 5.0237

>NTDB_id=731740 N5P13_RS06410 WP_004925639.1 1380491..1381540(-) (recA) [Acinetobacter baylyi strain JAT2091]
MDDNKSKALQAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAIA
QCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDHGEQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIIGSE
TKVKVVKNKMAPPFREAIFQILYGKGVNQLGELVDLAVQQNIVQKAGAWYSYQGNKIGQGKNNVIRYLEENPQISTEIEA
VIREQLLTKASDQTAAHDETEEEPDLLES

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=731740 N5P13_RS06410 WP_004925639.1 1380491..1381540(-) (recA) [Acinetobacter baylyi strain JAT2091]
ATGGATGATAATAAAAGCAAGGCATTACAAGCTGCTTTAAGTCAGATTGAAAAACAATTTGGCAAAAATACAGTAATGCG
TTTAGGTGATAATACCGTTCAAGCTGTTGAAGCCGTTTCGACAGGCTCTCTTACTCTAGATATTGCATTAGGTATTGGTG
GCTTACCTAAAGGGCGTATTGTAGAGATTTACGGTCCTGAATCTTCTGGTAAAACAACCATGACTTTGCAAGCAATTGCA
CAATGTCAGAAAGCAGGTGGTACCTGTGCTTTTATTGATGCAGAACATGCATTAGACCCTCAGTATGCCCGTAAGCTGGG
TGTAGACATAGACAATCTTTTGGTATCGCAGCCTGATCATGGTGAACAAGCTCTGGAAATTGCAGATATGCTTGTACGCT
CTGGTGCGATTGATCTGATTGTAGTCGACTCTGTAGCAGCATTAACCCCAAAAGCCGAAATTGAAGGTGAAATGGGCGAC
TCCCACATGGGTTTACAAGCCCGCTTAATGAGTCAAGCCTTACGTAAAATCACGGGTAATGCTAAACGTTCGAATTGCAT
GGTAATCTTCATTAACCAGATTCGTATGAAAATTGGCGTAATGTTTGGCAGCCCAGAAACCACAACTGGTGGTAATGCAC
TAAAATTCTATGCATCTGTACGTCTAGATATACGCCGTATTGGTCAAGTTAAAGAAGGTGATGAAATCATTGGTTCTGAA
ACCAAAGTCAAAGTCGTTAAAAATAAAATGGCCCCTCCTTTCCGTGAAGCAATCTTCCAAATTTTATATGGCAAGGGTGT
CAATCAACTTGGCGAATTGGTTGATCTTGCAGTTCAACAAAATATTGTACAAAAAGCTGGTGCTTGGTATTCATACCAAG
GCAATAAAATTGGTCAGGGTAAGAATAACGTGATTCGTTATCTTGAAGAGAACCCTCAGATTTCTACAGAAATTGAAGCG
GTTATCCGTGAACAATTATTGACTAAGGCATCAGATCAGACCGCTGCTCACGATGAAACTGAAGAAGAACCAGATTTACT
GGAAAGTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0A8JAA4

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

100

100

1

  recA Acinetobacter baumannii D1279779

93.084

99.427

0.926

  recA Pseudomonas stutzeri DSM 10701

75.224

95.989

0.722

  recA Vibrio cholerae strain A1552

70.69

99.713

0.705

  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.69

99.713

0.705

  recA Ralstonia pseudosolanacearum GMI1000

67.33

100

0.679

  recA Glaesserella parasuis strain SC1401

69.298

97.994

0.679

  recA Neisseria gonorrhoeae MS11

67.151

98.567

0.662

  recA Neisseria gonorrhoeae MS11

67.151

98.567

0.662

  recA Neisseria gonorrhoeae strain FA1090

67.151

98.567

0.662

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.974

98.281

0.619

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.772

95.702

0.61

  recA Streptococcus mutans UA159

59.375

100

0.599

  recA Helicobacter pylori strain NCTC11637

63.914

93.696

0.599

  recA Helicobacter pylori 26695

63.609

93.696

0.596

  recA Streptococcus mitis NCTC 12261

58.192

100

0.59

  recA Streptococcus pyogenes NZ131

62.154

93.123

0.579

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.81

90.258

0.576

  recA Bacillus subtilis subsp. subtilis str. 168

62.422

92.264

0.576

  recA Streptococcus pneumoniae Rx1

61.35

93.41

0.573

  recA Streptococcus pneumoniae D39

61.35

93.41

0.573

  recA Streptococcus pneumoniae R6

61.35

93.41

0.573

  recA Streptococcus pneumoniae TIGR4

61.35

93.41

0.573

  recA Streptococcus mitis SK321

61.043

93.41

0.57

  recA Lactococcus lactis subsp. cremoris KW2

59.443

92.55

0.55

  recA Latilactobacillus sakei subsp. sakei 23K

59.19

91.977

0.544