Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   N5O87_RS14530 Genome accession   NZ_CP104582
Coordinates   3001860..3002903 (-) Length   347 a.a.
NCBI ID   WP_230927230.1    Uniprot ID   -
Organism   Pseudomonas sp. GD03919     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2996860..3007903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5O87_RS14505 (N5O87_14505) rmf 2998706..2998921 (+) 216 WP_003244273.1 ribosome modulation factor -
  N5O87_RS14510 (N5O87_14510) - 2999015..3000037 (-) 1023 WP_279530794.1 quinone-dependent dihydroorotate dehydrogenase -
  N5O87_RS14515 (N5O87_14515) - 3000126..3000347 (-) 222 WP_279530795.1 DUF2835 domain-containing protein -
  N5O87_RS14520 (N5O87_14520) - 3000492..3001373 (+) 882 WP_279530796.1 DUF6685 family protein -
  N5O87_RS14525 (N5O87_14525) recX 3001387..3001848 (-) 462 WP_279530797.1 recombination regulator RecX -
  N5O87_RS14530 (N5O87_14530) recA 3001860..3002903 (-) 1044 WP_230927230.1 recombinase RecA Machinery gene
  N5O87_RS14535 (N5O87_14535) - 3002991..3003491 (-) 501 WP_279530798.1 CinA family protein -
  N5O87_RS14540 (N5O87_14540) mutS 3003570..3006137 (+) 2568 WP_279530799.1 DNA mismatch repair protein MutS -
  N5O87_RS14545 (N5O87_14545) fdxA 3006276..3006599 (+) 324 WP_279530800.1 ferredoxin FdxA -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37159.54 Da        Isoelectric Point: 5.5176

>NTDB_id=730714 N5O87_RS14530 WP_230927230.1 3001860..3002903(-) (recA) [Pseudomonas sp. GD03919]
MDENKKRALAAALGQIEKQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKHGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGAVKEGEEVVGSE
TRVKIVKNKVAPPFRQAEFQILYGKGIYRNGEIIDLGVQQGLVEKSGAWYSYQGNKIGQGKANAAKFLEDNPAVAREIED
QIRQKLLVSNAPAKAAADDLADAEVDF

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=730714 N5O87_RS14530 WP_230927230.1 3001860..3002903(-) (recA) [Pseudomonas sp. GD03919]
ATGGACGAGAACAAGAAGCGCGCCTTGGCGGCTGCCCTGGGCCAGATCGAGAAGCAGTTTGGCAAGGGTGCGGTGATGCG
CATGGGCGACCATGAGCGTCAGGCCATTCCGGCCATCTCCACGGGTTCGCTGGGTTTGGACATCGCCCTTGGTATCGGCG
GTTTGCCGAAAGGCCGGATCGTGGAAATCTACGGCCCGGAATCCTCCGGCAAGACGACCCTGACCCTGTCGGTGATCGCC
GAGGCGCAGAAGCATGGCGCTACCTGTGCCTTCGTCGACGCCGAGCACGCGCTGGATCCCGACTACGCCGGCAAGCTTGG
CGTCAATGTCGATGACCTGCTGGTGTCGCAGCCGGATACCGGCGAGCAGGCGCTGGAAATCACCGACATGCTGGTGCGCT
CCAATGCCATCGACGTAATCATCGTCGACTCCGTGGCGGCTCTGGTGCCCAAGGCGGAAATCGAAGGTGAGATGGGTGAC
ATGCACGTCGGTCTCCAGGCGCGTCTCATGAGTCAGGCGCTGCGCAAGATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATTCGCATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACTCCTCGGTTCGTCTGGATATCCGCCGCACCGGCGCGGTCAAGGAAGGCGAGGAAGTGGTCGGTAGCGAA
ACCCGTGTGAAGATCGTCAAGAACAAGGTGGCGCCGCCTTTCCGTCAGGCCGAGTTCCAGATCCTCTACGGCAAGGGTAT
CTACCGTAACGGTGAGATCATCGACCTGGGCGTGCAGCAGGGGCTGGTCGAGAAATCCGGCGCCTGGTACAGCTACCAGG
GCAACAAGATCGGTCAGGGCAAGGCCAATGCTGCCAAGTTCCTGGAAGACAATCCGGCAGTGGCCCGTGAAATCGAAGAC
CAGATTCGTCAGAAACTGCTGGTCAGCAATGCACCAGCAAAGGCTGCCGCTGACGATCTGGCTGACGCAGAAGTCGACTT
CTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

90.778

100

0.908
  recA Acinetobacter baylyi ADP1

74.063

100

0.741
  recA Acinetobacter baumannii D1279779

74.041

97.695

0.723
  recA Vibrio cholerae strain A1552

71.594

99.424

0.712
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.594

99.424

0.712
  recA Glaesserella parasuis strain SC1401

70.674

98.271

0.695
  recA Ralstonia pseudosolanacearum GMI1000

71.56

94.236

0.674
  recA Neisseria gonorrhoeae MS11

71.914

93.372

0.671
  recA Neisseria gonorrhoeae MS11

71.914

93.372

0.671
  recA Neisseria gonorrhoeae strain FA1090

71.914

93.372

0.671
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.526

94.236

0.608
  recA Helicobacter pylori strain NCTC11637

64.22

94.236

0.605
  recA Helicobacter pylori 26695

63.609

94.236

0.599
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.677

96.254

0.594
  recA Bacillus subtilis subsp. subtilis str. 168

61.774

94.236

0.582
  recA Latilactobacillus sakei subsp. sakei 23K

58.788

95.101

0.559
  recA Streptococcus mutans UA159

59.077

93.66

0.553
  recA Streptococcus pyogenes NZ131

57.317

94.524

0.542
  recA Streptococcus mitis SK321

58.204

93.084

0.542
  recA Streptococcus mitis NCTC 12261

57.895

93.084

0.539
  recA Streptococcus pneumoniae Rx1

57.362

93.948

0.539
  recA Streptococcus pneumoniae D39

57.362

93.948

0.539
  recA Streptococcus pneumoniae R6

57.362

93.948

0.539
  recA Streptococcus pneumoniae TIGR4

57.362

93.948

0.539
  recA Lactococcus lactis subsp. cremoris KW2

56.347

93.084

0.524
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.015

94.813

0.522