Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   N4599_RS09765 Genome accession   NZ_CP104398
Coordinates   1974173..1975249 (+) Length   358 a.a.
NCBI ID   WP_003714432.1    Uniprot ID   E3CAB0
Organism   Limosilactobacillus oris strain AM_LB10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1969173..1980249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4599_RS09745 (N4599_09745) yfmH 1969586..1970884 (+) 1299 WP_260899747.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  N4599_RS09750 (N4599_09750) - 1970971..1972062 (+) 1092 WP_056984072.1 helix-turn-helix domain-containing protein -
  N4599_RS09755 (N4599_09755) pgsA 1972081..1972665 (+) 585 WP_003714395.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  N4599_RS09760 (N4599_09760) - 1972835..1974082 (+) 1248 WP_260899750.1 competence/damage-inducible protein A -
  N4599_RS09765 (N4599_09765) recA 1974173..1975249 (+) 1077 WP_003714432.1 recombinase RecA Machinery gene
  N4599_RS09770 (N4599_09770) rny 1975469..1976992 (+) 1524 WP_419719959.1 ribonuclease Y -
  N4599_RS09775 (N4599_09775) mutS 1977267..1979894 (+) 2628 WP_419719960.1 DNA mismatch repair protein MutS -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 38458.83 Da        Isoelectric Point: 5.3440

>NTDB_id=729576 N4599_RS09765 WP_003714432.1 1974173..1975249(+) (recA) [Limosilactobacillus oris strain AM_LB10]
MADQRKAALDKALQKIEKNFGKGSIMRMGDAADMKIATVSSGSLAIDKALGVGGYPRGRIVEIYGPESSGKTTVALHAVA
EVQRQGGTVAYIDAENALDPQYAEALGVDVDNLLLSQPDTGEEGLAIADALIATSAIDLVVIDSVAALVPQAEIDGDMGD
HHVGLQARLMSQALRKLSGEINKTKTIAIFINQIREKVGVMFGNPETTTGGRALKFYSTIRMEIRRAEQIKNGTDVIGNK
AKVKIVKNKVAPPFKRCEVDIMYGEGISKTGELLDMAVDQDLVKKSGAWYSYGNERIGQGRENAKQWLADHPDSMMELMN
KVRVANGMKPLEESKKAADDGDAPAAGQQETIEEASKN

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=729576 N4599_RS09765 WP_003714432.1 1974173..1975249(+) (recA) [Limosilactobacillus oris strain AM_LB10]
TTGGCAGACCAGCGTAAAGCAGCTTTAGATAAAGCACTTCAAAAGATTGAAAAGAACTTTGGTAAGGGTTCGATCATGCG
CATGGGGGATGCTGCCGACATGAAGATTGCGACGGTTTCCAGCGGTTCGCTGGCAATCGACAAGGCACTTGGTGTTGGCG
GTTATCCACGGGGCCGGATAGTAGAAATCTACGGTCCTGAAAGTTCGGGGAAGACGACTGTCGCCCTCCATGCCGTGGCA
GAAGTTCAACGGCAAGGGGGCACGGTAGCGTACATCGATGCCGAAAACGCCTTAGACCCGCAGTATGCGGAAGCCCTTGG
GGTTGATGTCGACAACCTGCTCTTATCCCAGCCAGACACCGGTGAAGAGGGACTGGCGATTGCAGATGCCTTAATTGCCA
CCAGTGCAATTGACCTGGTCGTGATTGATTCCGTAGCCGCCCTGGTTCCCCAAGCCGAAATTGATGGTGACATGGGTGAC
CACCACGTCGGTTTGCAGGCGCGGTTGATGTCCCAAGCCTTGCGGAAACTTTCTGGTGAAATCAACAAGACGAAGACAAT
TGCGATTTTCATCAATCAAATCCGTGAAAAGGTCGGGGTTATGTTTGGAAATCCCGAAACGACTACTGGGGGCCGGGCCC
TTAAATTTTACTCCACCATCCGGATGGAAATCCGCCGGGCGGAACAGATTAAGAACGGAACCGACGTCATCGGTAATAAG
GCGAAGGTTAAAATCGTTAAGAATAAGGTAGCGCCTCCGTTCAAGCGGTGTGAAGTTGATATCATGTATGGTGAAGGAAT
CTCGAAGACTGGTGAACTGTTGGATATGGCGGTAGACCAGGACCTGGTGAAGAAGAGCGGTGCATGGTACTCATACGGCA
ACGAACGAATTGGTCAGGGCCGGGAAAACGCCAAACAGTGGCTTGCTGATCACCCAGACAGCATGATGGAACTGATGAAT
AAGGTTCGGGTTGCTAATGGCATGAAGCCGCTGGAAGAGAGCAAGAAGGCCGCCGATGATGGTGACGCTCCGGCTGCTGG
TCAGCAGGAGACCATCGAAGAGGCCAGCAAGAACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E3CAB0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

77.039

92.458

0.712
  recA Bacillus subtilis subsp. subtilis str. 168

70.732

91.62

0.648
  recA Streptococcus mutans UA159

63.361

100

0.642
  recA Streptococcus mitis NCTC 12261

66.471

94.972

0.631
  recA Streptococcus mitis SK321

65.982

95.251

0.628
  recA Streptococcus pyogenes NZ131

67.069

92.458

0.62
  recA Streptococcus pneumoniae TIGR4

67.173

91.899

0.617
  recA Streptococcus pneumoniae D39

67.173

91.899

0.617
  recA Streptococcus pneumoniae Rx1

67.173

91.899

0.617
  recA Streptococcus pneumoniae R6

67.173

91.899

0.617
  recA Lactococcus lactis subsp. cremoris KW2

66.565

91.899

0.612
  recA Neisseria gonorrhoeae strain FA1090

58.96

96.648

0.57
  recA Neisseria gonorrhoeae MS11

58.96

96.648

0.57
  recA Neisseria gonorrhoeae MS11

58.96

96.648

0.57
  recA Ralstonia pseudosolanacearum GMI1000

62.658

88.268

0.553
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.633

91.341

0.545
  recA Glaesserella parasuis strain SC1401

56.765

94.972

0.539
  recA Vibrio cholerae O1 biovar El Tor strain E7946

55.814

96.089

0.536
  recA Vibrio cholerae strain A1552

55.814

96.089

0.536
  recA Helicobacter pylori 26695

56.305

95.251

0.536
  recA Helicobacter pylori strain NCTC11637

56.305

95.251

0.536
  recA Acinetobacter baylyi ADP1

58.514

90.223

0.528
  recA Pseudomonas stutzeri DSM 10701

58.204

90.223

0.525
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.538

90.782

0.522
  recA Acinetobacter baumannii D1279779

57.585

90.223

0.52
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.848

92.179

0.506