Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   N4T19_RS17845 Genome accession   NZ_CP104377
Coordinates   3891234..3892310 (+) Length   358 a.a.
NCBI ID   WP_116926195.1    Uniprot ID   A0A363RMP5
Organism   Comamonas sp. PR12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3886234..3897310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4T19_RS17820 (N4T19_17820) - 3886258..3887100 (+) 843 WP_116926045.1 SPOR domain-containing protein -
  N4T19_RS17825 (N4T19_17825) - 3887113..3888567 (-) 1455 WP_116926046.1 sensor histidine kinase -
  N4T19_RS17830 (N4T19_17830) - 3888631..3889317 (-) 687 WP_021026639.1 response regulator transcription factor -
  N4T19_RS17835 (N4T19_17835) - 3889594..3890535 (+) 942 WP_182344614.1 SdiA-regulated domain-containing protein -
  N4T19_RS17840 (N4T19_17840) - 3890556..3891044 (-) 489 WP_182344617.1 MarR family winged helix-turn-helix transcriptional regulator -
  N4T19_RS17845 (N4T19_17845) recA 3891234..3892310 (+) 1077 WP_116926195.1 recombinase RecA Machinery gene
  N4T19_RS17850 (N4T19_17850) recX 3892398..3892847 (+) 450 WP_182344619.1 recombination regulator RecX -
  N4T19_RS17855 (N4T19_17855) - 3892932..3893183 (+) 252 WP_116926050.1 VF530 family DNA-binding protein -
  N4T19_RS17860 (N4T19_17860) - 3893292..3893771 (+) 480 WP_116926051.1 VOC family protein -
  N4T19_RS17865 (N4T19_17865) yddG 3893791..3894711 (-) 921 WP_182344621.1 aromatic amino acid DMT transporter YddG -
  N4T19_RS17870 (N4T19_17870) - 3894873..3895022 (-) 150 WP_182344623.1 hypothetical protein -
  N4T19_RS17875 (N4T19_17875) yddG 3895147..3896085 (-) 939 WP_260718676.1 aromatic amino acid DMT transporter YddG -
  N4T19_RS17880 (N4T19_17880) - 3896252..3897208 (-) 957 WP_182344627.1 2-hydroxyacid dehydrogenase -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 38106.58 Da        Isoelectric Point: 4.8799

>NTDB_id=729228 N4T19_RS17845 WP_116926195.1 3891234..3892310(+) (recA) [Comamonas sp. PR12]
MNAPATKPEANSEKAKALAAALAQIEKQFGKGTIMKLGEGEAVSDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSG
KTTLTLQVIAEMQKLGGTCAFIDAEHALDTSYAQKLGVNLGDILISQPDTGEQALEIVDSLVRSGAVDLIVVDSVAALTP
KAEIEGEMGDQLPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTI
KRGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEILDMGVNARIIEKSGAWYAYNGEKIGQGRDNSREFLRE
NSDLAIEIENKVRESLNISLRPAEDGVVDGPVATGTEG

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=729228 N4T19_RS17845 WP_116926195.1 3891234..3892310(+) (recA) [Comamonas sp. PR12]
ATGAACGCACCCGCCACCAAACCCGAAGCCAACAGCGAAAAAGCCAAGGCCCTGGCCGCCGCCCTGGCCCAGATCGAAAA
GCAGTTCGGCAAGGGCACCATCATGAAGCTGGGCGAAGGCGAAGCGGTGTCGGACATCCAGGTGGTGTCGACCGGCTCGC
TGGGTCTGGACATTGCGCTGGGCGTTGGCGGCCTGCCACGCGGCCGGGTCATCGAGATCTACGGCCCTGAATCCTCGGGC
AAGACCACCTTGACCCTGCAGGTGATTGCCGAGATGCAAAAGCTGGGCGGCACCTGCGCCTTCATCGATGCCGAGCATGC
GCTGGACACCAGCTATGCCCAAAAGCTGGGCGTGAACCTGGGCGATATCCTGATCAGCCAGCCCGACACCGGTGAGCAGG
CGCTGGAGATTGTGGACAGCCTGGTGCGCTCCGGCGCGGTGGACCTGATCGTTGTCGACTCGGTCGCGGCCCTGACCCCC
AAGGCGGAAATCGAAGGCGAAATGGGTGACCAGCTGCCCGGTCTGCAGGCCCGCCTGATGAGCCAGGCACTGCGCAAGCT
CACCGCCACGATCAAGAAGACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCA
GCCCCGAGACCACCACCGGCGGTAATGCACTGAAGTTCTACGCCTCGGTGCGCCTCGATATCCGCCGCACCGGCACCATC
AAGCGTGGTGACGAGGCCATCGGCAACGAAACCAAGGTCAAGGTGGTCAAGAACAAGGTATCGCCCCCGTTCAAGACGGC
CGAGTTCGACATTCTGTTTGGCGAAGGCATCTCGCGCGAAGGCGAAATTCTGGACATGGGCGTCAATGCCCGCATTATCG
AGAAAAGCGGTGCCTGGTACGCCTACAACGGCGAGAAGATCGGCCAGGGCCGTGACAACTCGCGCGAGTTCTTGCGTGAG
AACTCCGACCTCGCCATCGAGATCGAGAACAAGGTGCGCGAGAGCCTGAACATCAGCCTGCGCCCCGCCGAAGACGGCGT
GGTGGACGGCCCGGTAGCGACCGGCACCGAAGGCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A363RMP5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

82.54

87.989

0.726
  recA Pseudomonas stutzeri DSM 10701

70.517

91.899

0.648
  recA Glaesserella parasuis strain SC1401

71.296

90.503

0.645
  recA Acinetobacter baumannii D1279779

70.552

91.061

0.642
  recA Neisseria gonorrhoeae MS11

71.207

90.223

0.642
  recA Neisseria gonorrhoeae MS11

71.207

90.223

0.642
  recA Neisseria gonorrhoeae strain FA1090

71.207

90.223

0.642
  recA Acinetobacter baylyi ADP1

70.245

91.061

0.64
  recA Vibrio cholerae strain A1552

69.325

91.061

0.631
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.325

91.061

0.631
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.47

92.737

0.626
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.173

91.899

0.617
  recA Helicobacter pylori 26695

63.314

94.413

0.598
  recA Helicobacter pylori strain NCTC11637

63.314

94.413

0.598
  recA Bacillus subtilis subsp. subtilis str. 168

64.526

91.341

0.589
  recA Latilactobacillus sakei subsp. sakei 23K

62.5

93.855

0.587
  recA Lactococcus lactis subsp. cremoris KW2

62.27

91.061

0.567
  recA Streptococcus pyogenes NZ131

62.154

90.782

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.644

94.134

0.561
  recA Streptococcus pneumoniae D39

60.423

92.458

0.559
  recA Streptococcus pneumoniae Rx1

60.423

92.458

0.559
  recA Streptococcus pneumoniae R6

60.423

92.458

0.559
  recA Streptococcus pneumoniae TIGR4

60.423

92.458

0.559
  recA Streptococcus mutans UA159

61.231

90.782

0.556
  recA Streptococcus mitis NCTC 12261

61.043

91.061

0.556
  recA Streptococcus mitis SK321

61.043

91.061

0.556