Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   N3115_RS10495 Genome accession   NZ_CP104332
Coordinates   2061409..2062458 (-) Length   349 a.a.
NCBI ID   WP_152019585.1    Uniprot ID   -
Organism   Aliarcobacter butzleri strain P1200     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2056409..2067458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N3115_RS10470 (N3115_10470) - 2057679..2058191 (+) 513 WP_260765455.1 YfcE family phosphodiesterase -
  N3115_RS10475 (N3115_10475) - 2058181..2059029 (+) 849 WP_152019587.1 biotin synthase -
  N3115_RS10480 (N3115_10480) - 2059052..2059762 (-) 711 WP_152019586.1 AMIN domain-containing protein -
  N3115_RS10485 (N3115_10485) - 2059759..2060004 (-) 246 WP_004511127.1 hypothetical protein -
  N3115_RS10490 (N3115_10490) eno 2060008..2061288 (-) 1281 WP_014469497.1 phosphopyruvate hydratase -
  N3115_RS10495 (N3115_10495) recA 2061409..2062458 (-) 1050 WP_152019585.1 recombinase RecA Machinery gene
  N3115_RS10500 (N3115_10500) - 2062559..2062753 (-) 195 WP_004511130.1 hypothetical protein -
  N3115_RS10505 (N3115_10505) pseB 2062878..2063870 (+) 993 WP_012148086.1 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) -
  N3115_RS10510 (N3115_10510) pseC 2063867..2064997 (+) 1131 WP_260765458.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase -
  N3115_RS10515 (N3115_10515) pseF 2064990..2065688 (+) 699 WP_152019583.1 pseudaminic acid cytidylyltransferase -
  N3115_RS10520 (N3115_10520) pseI 2065685..2066710 (+) 1026 WP_152019582.1 pseudaminic acid synthase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37500.83 Da        Isoelectric Point: 4.6860

>NTDB_id=728709 N3115_RS10495 WP_152019585.1 2061409..2062458(-) (recA) [Aliarcobacter butzleri strain P1200]
MDENQKKSLELAIKQIDKAFGKGTLIRLGDKEVIPVETISTGSLGLDLALGVGGLPRGRVIEIYGPESSGKTTLTLHAIA
EAQKAGGVCAFIDAEHALDVKYAKDIGVDTDNLLVSQPDFGEQALEILETVIRSGAVDLVVVDSVAALTPKVEIDGDMDD
QQVGVQARLMSKALRKVTGLLSKMNCTVIFINQIRMKIGMTGYGSPETTTGGNALKFYSSVRLDIRRIATLKQGENSIGN
RVKVKVVKNKVAAPFKQAEFDIMFGEGISKTGELVDYGVKLDIVDKAGAWFSYGDSKIGQGRENSKVFLKDNPEVAREIE
NKILESMGVNDELITSGADDSDDMSGLDD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=728709 N3115_RS10495 WP_152019585.1 2061409..2062458(-) (recA) [Aliarcobacter butzleri strain P1200]
ATGGATGAAAATCAAAAAAAATCGTTAGAATTAGCTATAAAACAAATAGATAAAGCTTTTGGTAAAGGTACTTTAATTAG
ACTTGGAGATAAAGAAGTTATTCCTGTTGAAACTATTAGTACAGGTTCTTTAGGACTTGATTTAGCTTTAGGTGTTGGAG
GACTTCCAAGAGGAAGAGTTATTGAAATTTATGGACCTGAAAGTTCAGGAAAAACAACTTTAACTTTACATGCTATTGCA
GAAGCTCAAAAAGCTGGTGGAGTTTGTGCCTTTATTGATGCTGAACATGCACTTGATGTAAAATATGCAAAAGATATTGG
TGTTGATACAGATAATCTACTTGTTTCTCAACCAGATTTTGGAGAACAAGCATTAGAGATTCTGGAAACTGTTATTAGAA
GTGGAGCTGTTGATTTAGTAGTTGTAGATTCAGTTGCTGCACTTACTCCAAAAGTAGAAATCGATGGAGATATGGACGAC
CAACAAGTTGGAGTTCAAGCAAGACTTATGAGTAAAGCATTAAGAAAAGTAACTGGACTTTTAAGTAAAATGAATTGTAC
GGTTATTTTTATTAACCAAATAAGAATGAAAATTGGTATGACAGGATATGGAAGTCCTGAAACTACTACTGGTGGAAATG
CGCTTAAATTCTACTCTTCAGTTAGACTTGATATTAGAAGAATTGCAACTTTAAAACAAGGTGAAAATTCTATTGGAAAT
AGAGTTAAAGTAAAAGTTGTAAAAAATAAAGTTGCAGCTCCATTTAAACAAGCAGAGTTTGATATTATGTTCGGAGAAGG
TATTTCAAAAACTGGTGAACTTGTTGATTACGGTGTAAAACTTGATATTGTTGATAAAGCAGGAGCTTGGTTTAGTTATG
GAGATTCAAAAATTGGGCAAGGTAGAGAAAACTCTAAAGTATTCTTAAAAGATAATCCCGAAGTTGCACGTGAGATTGAA
AATAAAATCTTAGAATCTATGGGTGTAAATGATGAACTTATAACAAGTGGAGCTGATGATAGCGATGATATGTCTGGTTT
AGATGACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

75.439

97.994

0.739
  recA Helicobacter pylori 26695

76.048

95.702

0.728
  recA Helicobacter pylori strain NCTC11637

76.048

95.702

0.728
  recA Neisseria gonorrhoeae MS11

62.791

98.567

0.619
  recA Neisseria gonorrhoeae strain FA1090

62.791

98.567

0.619
  recA Neisseria gonorrhoeae MS11

62.791

98.567

0.619
  recA Acinetobacter baumannii D1279779

63.717

97.135

0.619
  recA Acinetobacter baylyi ADP1

62.391

98.281

0.613
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.264

95.415

0.613
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.694

99.14

0.602
  recA Vibrio cholerae strain A1552

60.694

99.14

0.602
  recA Ralstonia pseudosolanacearum GMI1000

66.032

90.258

0.596
  recA Glaesserella parasuis strain SC1401

59.483

99.713

0.593
  recA Pseudomonas stutzeri DSM 10701

62.539

92.55

0.579
  recA Bacillus subtilis subsp. subtilis str. 168

60.366

93.983

0.567
  recA Streptococcus mitis NCTC 12261

57.143

98.281

0.562
  recA Latilactobacillus sakei subsp. sakei 23K

58.788

94.556

0.556
  recA Streptococcus mitis SK321

58.61

94.842

0.556
  recA Streptococcus pyogenes NZ131

58.485

94.556

0.553
  recA Streptococcus mutans UA159

57.784

95.702

0.553
  recA Streptococcus pneumoniae D39

58.006

94.842

0.55
  recA Streptococcus pneumoniae TIGR4

58.006

94.842

0.55
  recA Streptococcus pneumoniae R6

58.006

94.842

0.55
  recA Streptococcus pneumoniae Rx1

58.006

94.842

0.55
  recA Lactococcus lactis subsp. cremoris KW2

57.576

94.556

0.544
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.282

93.41

0.544