Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   W01_RS04090 Genome accession   NZ_AP019547
Coordinates   928985..930016 (-) Length   343 a.a.
NCBI ID   WP_173052322.1    Uniprot ID   A0A455X9Z3
Organism   Candidatus Nitrotoga sp. AM1P     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 923985..935016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  W01_RS04060 (W01_07850) - 924052..924963 (-) 912 WP_173052313.1 HprK-related kinase A -
  W01_RS04065 (W01_07860) - 924966..925244 (-) 279 WP_173052314.1 HPr-rel-A system PqqD family peptide chaperone -
  W01_RS04070 - 925305..926057 (-) 753 WP_173052316.1 hypothetical protein -
  W01_RS04075 (W01_07890) fnr 926947..927675 (+) 729 WP_173052318.1 fumarate/nitrate reduction transcriptional regulator Fnr -
  W01_RS04080 (W01_07900) - 927894..928481 (+) 588 WP_173052320.1 SCO family protein -
  W01_RS04085 (W01_07910) recX 928546..929019 (-) 474 WP_242007031.1 recombination regulator RecX -
  W01_RS04090 (W01_07920) recA 928985..930016 (-) 1032 WP_173052322.1 recombinase RecA Machinery gene
  W01_RS04095 (W01_07930) - 930147..930656 (-) 510 WP_173052323.1 nicotinamide-nucleotide amidohydrolase family protein -
  W01_RS04100 (W01_07940) - 930781..931974 (-) 1194 WP_173052325.1 O-succinylhomoserine sulfhydrylase -
  W01_RS04105 (W01_07950) - 932383..933108 (+) 726 WP_173055732.1 YebC/PmpR family DNA-binding transcriptional regulator -
  W01_RS04110 (W01_07960) ruvC 933158..933694 (+) 537 WP_173052327.1 crossover junction endodeoxyribonuclease RuvC -
  W01_RS04115 (W01_07970) ruvA 933801..934379 (+) 579 WP_173052329.1 Holliday junction branch migration protein RuvA -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 36784.22 Da        Isoelectric Point: 5.8345

>NTDB_id=72840 W01_RS04090 WP_173052322.1 928985..930016(-) (recA) [Candidatus Nitrotoga sp. AM1P]
MDDNKSKALAAALSQIEKQFGKGSIMRLGEHDIARDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKTTLTLQVI
AEMQKLGGTAAFIDAEHALDPQYAQKLGVNVSELLISQPDNGEQALEIADMLVRSAAVDVVVVDSVAALTPKAEIEGEMG
EPQMGLQARLMSQALRKLTANIKRSNTTVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRVGAIKKGDEVIGS
ETRVKVVKNKVAPPFKQAEFDILYGEGISREGEVVELGVLHKLVEKAGAWYSYKGEKIGQGKDNAREYLKEHPEMAIEIE
NKIRAAAGVVALNDGTESGAKEA

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=72840 W01_RS04090 WP_173052322.1 928985..930016(-) (recA) [Candidatus Nitrotoga sp. AM1P]
ATGGATGATAATAAAAGCAAGGCACTTGCGGCGGCTCTGAGTCAGATTGAAAAGCAGTTCGGCAAGGGTTCTATTATGCG
TTTGGGTGAGCATGATATTGCGCGCGATATTCAAGTGGTTTCTACTGGATCATTAGGATTGGATATCGCGCTGGGCGTGG
GTGGCCTGCCGCGTGGTCGTGTAATTGAAATCTACGGACCGGAATCGTCCGGCAAGACCACGCTCACATTGCAAGTAATC
GCCGAAATGCAAAAATTAGGCGGAACGGCTGCATTTATTGATGCAGAACATGCGCTCGATCCGCAATACGCGCAAAAGCT
GGGCGTGAATGTCAGTGAGTTGCTCATTTCGCAACCGGATAACGGTGAGCAAGCGTTGGAGATTGCTGATATGTTGGTGC
GTTCGGCTGCTGTGGATGTGGTGGTGGTTGATTCTGTGGCAGCACTGACTCCCAAGGCGGAAATTGAAGGGGAAATGGGC
GAGCCGCAAATGGGTTTGCAGGCACGTTTGATGTCGCAGGCATTGCGCAAGTTGACCGCTAACATCAAGCGTTCCAATAC
AACAGTGATTTTTATTAATCAGATACGTATGAAAATCGGTGTGATGTTTGGTAGCCCGGAAACCACGACCGGCGGCAATG
CTCTAAAATTCTATGCTTCAGTTCGGCTGGACATTCGTCGTGTCGGTGCGATTAAAAAGGGCGATGAGGTAATCGGTTCA
GAAACCCGCGTGAAAGTGGTTAAGAACAAGGTGGCGCCGCCGTTCAAACAGGCGGAATTCGATATTTTATATGGTGAAGG
TATTTCTCGTGAAGGCGAAGTCGTCGAATTGGGTGTACTGCACAAACTGGTCGAGAAAGCTGGCGCTTGGTACAGTTACA
AGGGTGAGAAGATTGGTCAGGGAAAAGATAATGCGCGCGAATATCTTAAAGAGCATCCTGAAATGGCAATTGAAATTGAG
AACAAAATCCGCGCTGCGGCTGGTGTAGTTGCACTCAATGATGGAACAGAAAGCGGTGCCAAAGAAGCTTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A455X9Z3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

75.375

97.085

0.732
  recA Acinetobacter baylyi ADP1

72.222

99.708

0.72
  recA Ralstonia pseudosolanacearum GMI1000

77.603

92.42

0.717
  recA Acinetobacter baumannii D1279779

74.691

94.461

0.706
  recA Neisseria gonorrhoeae MS11

71.006

98.542

0.7
  recA Neisseria gonorrhoeae MS11

71.006

98.542

0.7
  recA Neisseria gonorrhoeae strain FA1090

71.006

98.542

0.7
  recA Vibrio cholerae strain A1552

73.765

94.461

0.697
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.765

94.461

0.697
  recA Glaesserella parasuis strain SC1401

72.981

93.878

0.685
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.159

95.627

0.633
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.201

98.542

0.633
  recA Bacillus subtilis subsp. subtilis str. 168

65.337

95.044

0.621
  recA Streptococcus pneumoniae R6

62.611

98.251

0.615
  recA Streptococcus pneumoniae Rx1

62.611

98.251

0.615
  recA Streptococcus pneumoniae D39

62.611

98.251

0.615
  recA Streptococcus pneumoniae TIGR4

62.611

98.251

0.615
  recA Streptococcus mitis NCTC 12261

60.933

100

0.609
  recA Streptococcus mitis SK321

60.819

99.708

0.606
  recA Streptococcus pyogenes NZ131

62.727

96.21

0.603
  recA Streptococcus mutans UA159

60.767

98.834

0.601
  recA Helicobacter pylori strain NCTC11637

62.614

95.918

0.601
  recA Helicobacter pylori 26695

62.31

95.918

0.598
  recA Latilactobacillus sakei subsp. sakei 23K

62.691

95.335

0.598
  recA Lactococcus lactis subsp. cremoris KW2

61.515

96.21

0.592
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.848

94.169

0.592

Multiple sequence alignment