Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   N2K12_RS18540 Genome accession   NZ_CP104279
Coordinates   3915926..3917038 (+) Length   370 a.a.
NCBI ID   WP_260674441.1    Uniprot ID   -
Organism   Comamonas aquatica strain SCLZS63     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3910926..3922038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N2K12_RS18520 - 3911879..3912850 (+) 972 WP_260675651.1 LysR substrate-binding domain-containing protein -
  N2K12_RS18525 - 3912873..3914345 (-) 1473 WP_260674439.1 sensor histidine kinase N-terminal domain-containing protein -
  N2K12_RS18530 - 3914415..3915089 (-) 675 WP_042415966.1 response regulator transcription factor -
  N2K12_RS18535 - 3915282..3915785 (-) 504 WP_260674440.1 MarR family winged helix-turn-helix transcriptional regulator -
  N2K12_RS18540 recA 3915926..3917038 (+) 1113 WP_260674441.1 recombinase RecA Machinery gene
  N2K12_RS18545 recX 3917115..3917576 (+) 462 WP_260674442.1 recombination regulator RecX -
  N2K12_RS18550 - 3917637..3918881 (-) 1245 WP_210929805.1 DUF4010 domain-containing protein -
  N2K12_RS18555 yddG 3918969..3919895 (-) 927 WP_260674443.1 aromatic amino acid DMT transporter YddG -
  N2K12_RS18560 argC 3920062..3920994 (-) 933 WP_183302626.1 N-acetyl-gamma-glutamyl-phosphate reductase -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39211.00 Da        Isoelectric Point: 5.0958

>NTDB_id=728219 N2K12_RS18540 WP_260674441.1 3915926..3917038(+) (recA) [Comamonas aquatica strain SCLZS63]
MNAIARNTDANSEKAKALAAALAQIEKQFGKGTIMKLGEGEAVEDIQVVSTGSLGLDVALGVGGLPRGRVIEIYGPESSG
KTTLTLQVVAEMQKLGGTCAFIDAEHALDTSYAQKLGVNLNEVLISQPDTGEQALEIVDSLVRSGAVDLIVVDSVAALVP
KAEIEGEMGDQLPGLQARLMSQALRKLTATIKKTNCTVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTI
KKGDNAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEILDMAVEAKLLEKSGAWYAYNGEKIGQGRDNAREFLKE
NPALAVEIENKVRESLGISLIPVAEGETAAKPAKGKKADKAVADEDGVIG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=728219 N2K12_RS18540 WP_260674441.1 3915926..3917038(+) (recA) [Comamonas aquatica strain SCLZS63]
ATGAACGCCATCGCCCGCAACACCGACGCCAACAGCGAAAAAGCCAAGGCCCTGGCCGCCGCCCTGGCCCAGATCGAAAA
GCAGTTTGGCAAGGGCACCATCATGAAGCTGGGCGAGGGCGAGGCCGTGGAGGACATCCAGGTCGTGTCCACCGGCTCGC
TGGGCCTGGACGTGGCCCTGGGCGTGGGCGGCCTGCCCCGCGGTCGTGTGATCGAGATCTACGGCCCCGAGTCGTCCGGC
AAGACCACGCTGACCCTGCAGGTCGTGGCCGAGATGCAGAAGCTGGGCGGCACCTGCGCCTTCATCGACGCCGAGCACGC
GCTGGACACCAGCTATGCCCAGAAGCTGGGCGTGAACCTGAACGAGGTGCTGATCAGCCAGCCCGACACCGGTGAGCAGG
CCCTGGAAATCGTCGACAGTCTGGTGCGCTCCGGCGCCGTGGACCTGATCGTCGTCGACTCGGTGGCCGCCCTGGTGCCC
AAGGCCGAAATCGAAGGCGAAATGGGCGACCAGTTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCT
GACCGCCACCATCAAGAAGACCAACTGCACGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGTGTGATGTTCGGCT
CGCCCGAAACCACCACCGGCGGCAATGCGCTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCACCGGCACCATC
AAGAAGGGCGACAACGCCATCGGCAACGAGACCAAGGTCAAGGTGGTGAAGAACAAGGTGTCGCCCCCGTTCAAGACGGC
CGAGTTCGACATCCTGTTCGGCGAAGGCATCAGCCGCGAGGGCGAGATCCTGGACATGGCCGTGGAAGCCAAGCTGCTGG
AAAAGTCCGGCGCCTGGTATGCCTACAACGGCGAGAAGATCGGCCAGGGCCGTGACAACGCCCGCGAGTTCCTGAAGGAA
AACCCCGCGCTGGCCGTGGAAATCGAGAACAAGGTGCGCGAGAGCCTGGGCATCAGCCTGATCCCCGTGGCCGAAGGCGA
AACCGCCGCCAAGCCCGCCAAGGGCAAGAAGGCCGACAAGGCCGTGGCCGATGAAGACGGCGTGATCGGCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

83.81

85.135

0.714
  recA Pseudomonas stutzeri DSM 10701

69.118

91.892

0.635
  recA Neisseria gonorrhoeae MS11

70.909

89.189

0.632
  recA Neisseria gonorrhoeae MS11

70.909

89.189

0.632
  recA Neisseria gonorrhoeae strain FA1090

70.909

89.189

0.632
  recA Glaesserella parasuis strain SC1401

71.605

87.568

0.627
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.962

91.622

0.614
  recA Acinetobacter baumannii D1279779

69.018

88.108

0.608
  recA Vibrio cholerae strain A1552

69.018

88.108

0.608
  recA Acinetobacter baylyi ADP1

69.018

88.108

0.608
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.018

88.108

0.608
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.565

88.919

0.592
  recA Streptococcus pneumoniae R6

59.61

97.027

0.578
  recA Streptococcus pneumoniae Rx1

59.61

97.027

0.578
  recA Streptococcus pneumoniae D39

59.61

97.027

0.578
  recA Streptococcus pneumoniae TIGR4

59.61

97.027

0.578
  recA Bacillus subtilis subsp. subtilis str. 168

65.138

88.378

0.576
  recA Helicobacter pylori strain NCTC11637

64.939

88.649

0.576
  recA Helicobacter pylori 26695

64.939

88.649

0.576
  recA Streptococcus mutans UA159

58.172

97.568

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

63.063

90

0.568
  recA Lactococcus lactis subsp. cremoris KW2

63.444

89.459

0.568
  recA Streptococcus mitis SK321

59.942

93.784

0.562
  recA Streptococcus pyogenes NZ131

62.614

88.919

0.557
  recA Streptococcus mitis NCTC 12261

61.329

89.459

0.549
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.909

89.189

0.543