Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   N0D28_RS13135 Genome accession   NZ_CP104213
Coordinates   2555271..2556362 (+) Length   363 a.a.
NCBI ID   WP_260559945.1    Uniprot ID   -
Organism   Deinococcus rubellus strain Ant6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2550271..2561362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N0D28_RS13105 (N0D28_13105) - 2550719..2551153 (+) 435 WP_260559939.1 disulfide bond formation protein B -
  N0D28_RS13110 (N0D28_13110) - 2551220..2551717 (-) 498 WP_260559940.1 hypothetical protein -
  N0D28_RS13115 (N0D28_13115) ddrC 2551809..2552546 (+) 738 WP_260559941.1 DNA damage response protein DdrC -
  N0D28_RS13120 (N0D28_13120) - 2552677..2553165 (+) 489 WP_260559942.1 (4Fe-4S)-binding protein -
  N0D28_RS13125 (N0D28_13125) - 2553290..2554552 (+) 1263 WP_260559943.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  N0D28_RS13130 (N0D28_13130) thpR 2554549..2555274 (+) 726 WP_260559944.1 RNA 2',3'-cyclic phosphodiesterase -
  N0D28_RS13135 (N0D28_13135) recA 2555271..2556362 (+) 1092 WP_260559945.1 recombinase RecA Machinery gene
  N0D28_RS13140 (N0D28_13140) - 2556433..2557026 (+) 594 WP_260559946.1 tetratricopeptide repeat protein -
  N0D28_RS13145 (N0D28_13145) - 2557023..2558099 (-) 1077 WP_260559947.1 glycoside hydrolase family 5 protein -
  N0D28_RS13150 (N0D28_13150) - 2558096..2558755 (-) 660 WP_260559948.1 response regulator transcription factor -
  N0D28_RS13155 (N0D28_13155) - 2558779..2560644 (-) 1866 WP_260559949.1 GAF domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 38398.98 Da        Isoelectric Point: 5.6256

>NTDB_id=728094 N0D28_RS13135 WP_260559945.1 2555271..2556362(+) (recA) [Deinococcus rubellus strain Ant6]
MSKDNPKETTAAPNNNVERTKAIDTAMSQIEKQFGKGSIVRLGANTKLDVQVISTGSLSLDLALGVGGIPRGRVTEIYGP
ESGGKTTLALAIIAQAQKAGGTAAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGAIDVVVVDSVA
ALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVRK
IGQPTKIGNDAVANTVKIKTVKNKVAAPFKEVELALVFGKGFDQLSDLVGLAADMDIVKKAGSFYSYNEERIGQGKEKAI
AYIAERPDLEQEIRERVTAAIKAGNVKDAVKPAAPEAELVAAE

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=728094 N0D28_RS13135 WP_260559945.1 2555271..2556362(+) (recA) [Deinococcus rubellus strain Ant6]
ATGAGCAAAGACAATCCCAAAGAAACCACCGCCGCCCCCAACAACAACGTGGAGCGCACCAAAGCCATCGACACGGCCAT
GAGCCAGATCGAGAAGCAGTTCGGCAAGGGCAGCATCGTCCGGCTGGGAGCCAATACCAAGCTCGACGTGCAGGTCATCA
GCACCGGCAGTCTCAGCCTCGATCTGGCGCTGGGCGTCGGCGGCATCCCGCGCGGGCGCGTCACCGAGATTTACGGCCCC
GAGTCGGGCGGCAAGACCACGCTGGCGCTGGCCATCATCGCCCAGGCCCAGAAAGCGGGCGGCACGGCGGCCTTCATCGA
CGCCGAGCACGCGCTCGACCCGGTGTACGCCCGCGCCCTGGGCGTCAACACCGACGAGTTGCTGGTGTCGCAGCCCGACA
ACGGTGAGCAGGCGCTGGAGATCATGGAACTGCTGGTGCGTTCGGGCGCAATCGACGTGGTCGTCGTGGACTCGGTGGCC
GCACTCACCCCCCGTGCCGAGATCGAGGGAGACATGGGCGACTCGCTGCCCGGTCTGCAGGCCCGCCTGATGTCGCAGGC
GCTGCGCAAGCTGACGGCCATTCTGTCCAAGACCGGCACCGCCGCCATCTTCATCAACCAGGTGCGCGAGAAGATCGGCG
TGATGTACGGCAACCCCGAGACCACCACCGGGGGCCGGGCGCTGAAGTTCTACGCCTCGGTCCGGCTCGACGTGCGCAAG
ATCGGTCAGCCCACCAAGATCGGCAACGACGCAGTGGCGAACACCGTCAAGATCAAGACGGTGAAGAACAAGGTGGCCGC
GCCGTTCAAGGAAGTCGAACTGGCACTGGTCTTCGGCAAGGGATTTGACCAGCTCAGCGATCTGGTGGGCCTGGCCGCCG
ACATGGACATCGTGAAAAAGGCGGGCAGCTTTTACAGCTACAACGAGGAGCGCATCGGCCAGGGCAAGGAAAAGGCGATT
GCCTACATCGCCGAGCGCCCCGATCTGGAACAGGAGATCCGCGAGCGCGTCACCGCCGCCATCAAGGCCGGGAACGTCAA
GGACGCAGTGAAGCCCGCCGCGCCTGAAGCGGAACTGGTGGCCGCCGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

91.014

95.041

0.865
  recA Streptococcus pneumoniae Rx1

60.819

94.215

0.573
  recA Streptococcus pneumoniae TIGR4

60.819

94.215

0.573
  recA Streptococcus pneumoniae R6

60.819

94.215

0.573
  recA Streptococcus pneumoniae D39

60.819

94.215

0.573
  recA Streptococcus mitis NCTC 12261

60.882

93.664

0.57
  recA Streptococcus mitis SK321

60.882

93.664

0.57
  recA Glaesserella parasuis strain SC1401

63.24

88.43

0.559
  recA Acinetobacter baumannii D1279779

63.636

87.879

0.559
  recA Streptococcus pyogenes NZ131

62.539

88.981

0.556
  recA Acinetobacter baylyi ADP1

63.81

86.777

0.554
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.617

88.43

0.554
  recA Vibrio cholerae strain A1552

62.617

88.43

0.554
  recA Bacillus subtilis subsp. subtilis str. 168

62.5

88.154

0.551
  recA Streptococcus mutans UA159

61.61

88.981

0.548
  recA Latilactobacillus sakei subsp. sakei 23K

58.187

94.215

0.548
  recA Lactococcus lactis subsp. cremoris KW2

58.896

89.807

0.529
  recA Pseudomonas stutzeri DSM 10701

55.394

94.49

0.523
  recA Helicobacter pylori strain NCTC11637

58.154

89.532

0.521
  recA Helicobacter pylori 26695

58.154

89.532

0.521
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.333

89.256

0.521
  recA Ralstonia pseudosolanacearum GMI1000

61.039

84.848

0.518
  recA Neisseria gonorrhoeae MS11

58.204

88.981

0.518
  recA Neisseria gonorrhoeae strain FA1090

58.204

88.981

0.518
  recA Neisseria gonorrhoeae MS11

58.204

88.981

0.518
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

54.386

94.215

0.512