Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   N0A20_RS10275 Genome accession   NZ_CP104207
Coordinates   1945919..1946995 (-) Length   358 a.a.
NCBI ID   WP_260580337.1    Uniprot ID   -
Organism   Sphingopyxis sp. PET50     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1940919..1951995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N0A20_RS10255 - 1942636..1943400 (-) 765 WP_260580333.1 hypothetical protein -
  N0A20_RS10260 - 1943504..1944094 (-) 591 WP_260580335.1 hypothetical protein -
  N0A20_RS10265 - 1944084..1944521 (-) 438 WP_312846517.1 glutathione S-transferase family protein -
  N0A20_RS20125 - 1944616..1944732 (-) 117 Protein_2060 glutathione S-transferase -
  N0A20_RS10270 - 1944745..1945560 (-) 816 WP_260580336.1 agmatinase family protein -
  N0A20_RS10275 recA 1945919..1946995 (-) 1077 WP_260580337.1 recombinase RecA Machinery gene
  N0A20_RS10280 - 1947118..1947471 (-) 354 WP_260580338.1 response regulator -
  N0A20_RS10285 - 1947471..1949840 (-) 2370 WP_260580340.1 response regulator -
  N0A20_RS10290 - 1949932..1951995 (-) 2064 WP_260580341.1 M13 family metallopeptidase -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 38219.60 Da        Isoelectric Point: 5.1767

>NTDB_id=728058 N0A20_RS10275 WP_260580337.1 1945919..1946995(-) (recA) [Sphingopyxis sp. PET50]
MAGQLSLVESGKSVNSSDRQKALDAALAQIDRAFGKGSVMKLGSKEAMQVESISTGSLGLDIALGVGGLPRGRVIEIYGP
ESSGKTTLALHTLAEAQKGGGTVAFVDAEHALDPIYAKKLGVNIDELIVSQPDTGEQALEIVDTLVRSNAIDVLVVDSVA
ALVPRAEIEGEMGDSHVGLQARLMSQSLRKLTGSISRSRCMVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRR
TGQIKNGDEIVGNTTRVKVVKNKVAPPFKQVEFDIMYGQGISKIGEILDIGVKAGLVEKSGAWFSYDSIRIGQGRENAKT
FLAENPELRERLEAAIRSRTDAVAEEMMAGPDDEGDDG

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=728058 N0A20_RS10275 WP_260580337.1 1945919..1946995(-) (recA) [Sphingopyxis sp. PET50]
ATGGCCGGTCAATTGTCACTCGTGGAATCGGGGAAATCAGTGAATAGCTCGGACAGGCAGAAGGCGCTCGACGCCGCGCT
GGCGCAAATCGATCGTGCCTTCGGCAAAGGCTCGGTGATGAAATTGGGCTCGAAGGAAGCGATGCAGGTCGAGTCGATCT
CGACCGGGTCGCTCGGGCTCGACATCGCGCTCGGCGTCGGCGGCCTGCCGCGCGGCCGCGTCATCGAAATCTATGGTCCC
GAAAGCTCGGGCAAGACCACGCTGGCGCTGCACACGCTGGCCGAGGCACAGAAGGGCGGCGGCACCGTCGCCTTCGTCGA
CGCCGAACATGCGCTCGACCCGATCTATGCCAAGAAGCTCGGCGTCAATATCGACGAACTGATCGTGTCGCAGCCCGACA
CCGGCGAACAGGCGCTCGAAATCGTCGACACGCTGGTGCGCTCGAACGCGATCGACGTGCTCGTCGTCGACTCGGTCGCC
GCGCTCGTCCCGCGCGCCGAAATCGAGGGCGAGATGGGCGACAGTCACGTCGGTCTCCAGGCGCGCCTGATGTCGCAGAG
CCTGCGCAAGCTCACCGGCTCGATCAGCCGCTCGCGCTGCATGGTGATCTTCATCAACCAGCTGCGCATGAAGATCGGGG
TGATGTACGGCAATCCCGAGACCACGACCGGCGGCAATGCGCTGAAATTCTACGCCTCGGTTCGCCTCGACATCCGCCGC
ACCGGCCAGATCAAGAATGGCGACGAGATCGTCGGCAACACCACCCGCGTCAAGGTCGTCAAGAACAAGGTCGCGCCGCC
GTTCAAGCAGGTCGAGTTCGACATCATGTACGGCCAGGGCATTTCCAAGATCGGCGAGATCCTCGACATCGGCGTCAAGG
CCGGGCTGGTCGAGAAATCGGGCGCCTGGTTCAGCTATGACTCGATCCGCATCGGGCAGGGCCGCGAAAACGCCAAGACT
TTCCTGGCCGAGAATCCCGAACTGCGCGAACGGCTCGAGGCCGCGATCCGCAGCCGCACCGACGCGGTGGCCGAAGAAAT
GATGGCGGGCCCCGACGACGAGGGCGACGACGGCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

67.251

95.531

0.642
  recA Neisseria gonorrhoeae strain FA1090

67.251

95.531

0.642
  recA Neisseria gonorrhoeae MS11

67.251

95.531

0.642
  recA Pseudomonas stutzeri DSM 10701

68.563

93.296

0.64
  recA Glaesserella parasuis strain SC1401

65.616

97.486

0.64
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.857

93.855

0.637
  recA Vibrio cholerae strain A1552

67.857

93.855

0.637
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.035

95.531

0.612
  recA Ralstonia pseudosolanacearum GMI1000

70.323

86.592

0.609
  recA Acinetobacter baylyi ADP1

64.881

93.855

0.609
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.165

93.017

0.606
  recA Acinetobacter baumannii D1279779

67.081

89.944

0.603
  recA Bacillus subtilis subsp. subtilis str. 168

65.944

90.223

0.595
  recA Latilactobacillus sakei subsp. sakei 23K

62.537

94.693

0.592
  recA Helicobacter pylori 26695

62.315

94.134

0.587
  recA Helicobacter pylori strain NCTC11637

62.018

94.134

0.584
  recA Streptococcus pneumoniae R6

60.526

95.531

0.578
  recA Streptococcus pneumoniae TIGR4

60.526

95.531

0.578
  recA Streptococcus pneumoniae Rx1

60.526

95.531

0.578
  recA Streptococcus pneumoniae D39

60.526

95.531

0.578
  recA Streptococcus pyogenes NZ131

59.767

95.81

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.702

91.899

0.567
  recA Streptococcus mitis NCTC 12261

62.154

90.782

0.564
  recA Streptococcus mitis SK321

62.154

90.782

0.564
  recA Streptococcus mutans UA159

57.714

97.765

0.564
  recA Lactococcus lactis subsp. cremoris KW2

58.896

91.061

0.536