Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | N0B18_RS09885 | Genome accession | NZ_CP103995 |
| Coordinates | 1860819..1861865 (+) | Length | 348 a.a. |
| NCBI ID | WP_003245789.1 | Uniprot ID | A0A199WHQ8 |
| Organism | Bacillus subtilis strain SRCM117109 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1853209..1907789 | 1860819..1861865 | within | 0 |
Gene organization within MGE regions
Location: 1853209..1907789
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N0B18_RS09845 (N0B18_09845) | yfmF | 1853209..1854489 (+) | 1281 | WP_014479812.1 | EF-P 5-aminopentanol modification-associated protein YfmF | - |
| N0B18_RS09850 (N0B18_09850) | yfmH | 1854486..1855772 (+) | 1287 | WP_003244823.1 | EF-P 5-aminopentanol modification-associated protein YfmH | - |
| N0B18_RS09855 (N0B18_09855) | ymfI | 1855827..1856555 (+) | 729 | WP_003244676.1 | elongation factor P 5-aminopentanone reductase | - |
| N0B18_RS09860 (N0B18_09860) | ymfJ | 1856636..1856893 (+) | 258 | WP_003245199.1 | DUF3243 domain-containing protein | - |
| N0B18_RS09865 (N0B18_09865) | - | 1857023..1857814 (+) | 792 | WP_003220998.1 | YmfK family protein | - |
| N0B18_RS09870 (N0B18_09870) | rodZ | 1857881..1858747 (+) | 867 | WP_206697876.1 | RodZ family helix-turn-helix domain-containing protein | - |
| N0B18_RS09875 (N0B18_09875) | pgsA | 1858797..1859378 (+) | 582 | WP_014479814.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| N0B18_RS09880 (N0B18_09880) | cinA | 1859396..1860646 (+) | 1251 | WP_003231847.1 | competence/damage-inducible protein A | Machinery gene |
| N0B18_RS09885 (N0B18_09885) | recA | 1860819..1861865 (+) | 1047 | WP_003245789.1 | recombinase RecA | Machinery gene |
| N0B18_RS09890 (N0B18_09890) | pbpX | 1862032..1863207 (+) | 1176 | WP_014479815.1 | serine hydrolase | - |
| N0B18_RS09895 (N0B18_09895) | rny | 1863483..1865045 (+) | 1563 | WP_003221010.1 | ribonuclease Y | - |
| N0B18_RS09900 (N0B18_09900) | ymdB | 1865114..1865908 (+) | 795 | WP_014479816.1 | 2',3'-cyclic-nucleotide 2'-phosphodiesterase | - |
| N0B18_RS09905 (N0B18_09905) | spoVS | 1866108..1866368 (+) | 261 | WP_003154135.1 | stage V sporulation protein SpoVS | - |
| N0B18_RS09910 (N0B18_09910) | tdh | 1866633..1867676 (+) | 1044 | WP_014479818.1 | L-threonine 3-dehydrogenase | - |
| N0B18_RS09915 (N0B18_09915) | kbl | 1867689..1868867 (+) | 1179 | WP_014479819.1 | glycine C-acetyltransferase | - |
| N0B18_RS09920 (N0B18_09920) | miaB | 1869015..1870544 (+) | 1530 | WP_014664026.1 | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | - |
| N0B18_RS09925 (N0B18_09925) | ricA | 1870546..1870977 (+) | 432 | WP_003231834.1 | regulatory iron-sulfur-containing complex subunit RicA | - |
| N0B18_RS09930 (N0B18_09930) | cotE | 1871239..1871784 (+) | 546 | WP_003231833.1 | outer spore coat protein CotE | - |
| N0B18_RS09935 (N0B18_09935) | mutS | 1871917..1874493 (+) | 2577 | WP_046160418.1 | DNA mismatch repair protein MutS | - |
| N0B18_RS09940 (N0B18_09940) | mutL | 1874509..1876392 (+) | 1884 | WP_069964159.1 | DNA mismatch repair endonuclease MutL | - |
| N0B18_RS09945 (N0B18_09945) | - | 1876828..1876911 (+) | 84 | WP_235091748.1 | XtrA/YqaO family protein | - |
| N0B18_RS22870 | - | 1876954..1877205 (+) | 252 | Protein_1907 | VWA domain-containing protein | - |
| N0B18_RS09955 (N0B18_09955) | - | 1877502..1877750 (+) | 249 | WP_031600520.1 | hypothetical protein | - |
| N0B18_RS09960 (N0B18_09960) | - | 1877801..1878163 (-) | 363 | WP_033881685.1 | Ig-like domain-containing protein | - |
| N0B18_RS09965 (N0B18_09965) | istB | 1878380..1879138 (-) | 759 | WP_014479891.1 | IS21-like element helper ATPase IstB | - |
| N0B18_RS09970 (N0B18_09970) | istA | 1879135..1880682 (-) | 1548 | WP_014480339.1 | IS21 family transposase | - |
| N0B18_RS09975 (N0B18_09975) | - | 1881068..1882315 (+) | 1248 | WP_031600262.1 | IS256-like element ISBsu2 family transposase | - |
| N0B18_RS09980 (N0B18_09980) | - | 1882464..1883048 (+) | 585 | WP_214283034.1 | hypothetical protein | - |
| N0B18_RS09985 (N0B18_09985) | - | 1883285..1883695 (+) | 411 | Protein_1914 | ArpU family phage packaging/lysis transcriptional regulator | - |
| N0B18_RS09990 (N0B18_09990) | - | 1883695..1884224 (+) | 530 | Protein_1915 | tyrosine-type recombinase/integrase | - |
| N0B18_RS09995 (N0B18_09995) | - | 1884494..1884646 (+) | 153 | WP_162175547.1 | hypothetical protein | - |
| N0B18_RS10000 (N0B18_10000) | - | 1884974..1885123 (+) | 150 | WP_031600526.1 | hypothetical protein | - |
| N0B18_RS10005 (N0B18_10005) | - | 1885192..1885509 (+) | 318 | WP_033881687.1 | hypothetical protein | - |
| N0B18_RS10010 (N0B18_10010) | - | 1885685..1885834 (+) | 150 | WP_236824261.1 | hypothetical protein | - |
| N0B18_RS10015 (N0B18_10015) | - | 1885919..1886533 (+) | 615 | WP_033881688.1 | hypothetical protein | - |
| N0B18_RS10020 (N0B18_10020) | - | 1886546..1886770 (+) | 225 | WP_033881690.1 | hypothetical protein | - |
| N0B18_RS10025 (N0B18_10025) | - | 1886767..1887141 (+) | 375 | WP_041516434.1 | HNH endonuclease signature motif containing protein | - |
| N0B18_RS10030 (N0B18_10030) | - | 1887036..1887449 (+) | 414 | WP_224588978.1 | hypothetical protein | - |
| N0B18_RS10035 (N0B18_10035) | - | 1887521..1888054 (+) | 534 | WP_017697674.1 | phage terminase small subunit P27 family | - |
| N0B18_RS10040 (N0B18_10040) | - | 1888054..1888221 (+) | 168 | WP_031600532.1 | hypothetical protein | - |
| N0B18_RS10045 (N0B18_10045) | - | 1888305..1889552 (-) | 1248 | WP_031600262.1 | IS256-like element ISBsu2 family transposase | - |
| N0B18_RS10050 (N0B18_10050) | ymzD | 1890599..1891054 (-) | 456 | WP_069964161.1 | regulatory YrvL family protein | - |
| N0B18_RS10055 (N0B18_10055) | - | 1891300..1892652 (+) | 1353 | WP_069964227.1 | IS1182 family transposase | - |
| N0B18_RS10060 (N0B18_10060) | - | 1892794..1893351 (-) | 558 | WP_017694906.1 | hypothetical protein | - |
| N0B18_RS10065 (N0B18_10065) | pksA | 1893472..1894086 (+) | 615 | WP_069964162.1 | TetR/AcrR family transcriptional regulator | - |
| N0B18_RS10070 (N0B18_10070) | - | 1894222..1894578 (-) | 357 | WP_003231786.1 | hypothetical protein | - |
| N0B18_RS10075 (N0B18_10075) | ymaE | 1894657..1895481 (-) | 825 | WP_072592535.1 | MBL fold metallo-hydrolase | - |
| N0B18_RS10080 (N0B18_10080) | aprX | 1895592..1896920 (-) | 1329 | WP_033881122.1 | serine protease AprX | - |
| N0B18_RS10085 (N0B18_10085) | - | 1897145..1897378 (+) | 234 | WP_014476869.1 | hypothetical protein | - |
| N0B18_RS10090 (N0B18_10090) | pghC | 1897658..1898365 (+) | 708 | WP_014479835.1 | poly-gamma-glutamate hydrolase family protein | - |
| N0B18_RS10095 (N0B18_10095) | ymaD | 1898435..1898887 (+) | 453 | WP_014479836.1 | OsmC family protein | - |
| N0B18_RS10100 (N0B18_10100) | ebrB | 1898901..1899254 (-) | 354 | WP_014479837.1 | multidrug efflux SMR transporter subunit EbrB | - |
| N0B18_RS10105 (N0B18_10105) | ebrA | 1899268..1899585 (-) | 318 | WP_009967307.1 | multidrug efflux SMR transporter subunit EbrA | - |
| N0B18_RS10110 (N0B18_10110) | - | 1899720..1899998 (-) | 279 | WP_014479838.1 | hypothetical protein | - |
| N0B18_RS10115 (N0B18_10115) | ymaF | 1900087..1900500 (+) | 414 | WP_072592536.1 | YmaF family protein | - |
| N0B18_RS10120 (N0B18_10120) | miaA | 1900600..1901544 (+) | 945 | WP_014479840.1 | tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA | - |
| N0B18_RS10125 (N0B18_10125) | hfq | 1901584..1901805 (+) | 222 | WP_003221097.1 | RNA chaperone Hfq | - |
| N0B18_RS10130 (N0B18_10130) | ymzC | 1902000..1902272 (+) | 273 | WP_014479841.1 | YmzC family protein | - |
| N0B18_RS10135 (N0B18_10135) | - | 1902354..1902584 (+) | 231 | WP_003245262.1 | hypothetical protein | - |
| N0B18_RS10140 (N0B18_10140) | nrdI | 1902827..1903219 (+) | 393 | WP_003231758.1 | class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI | - |
| N0B18_RS10145 (N0B18_10145) | nrdE | 1903179..1905281 (+) | 2103 | WP_014479842.1 | class 1b ribonucleoside-diphosphate reductase subunit alpha | - |
| N0B18_RS10150 (N0B18_10150) | nrdF | 1905299..1906288 (+) | 990 | WP_003231754.1 | class 1b ribonucleoside-diphosphate reductase subunit beta | - |
| N0B18_RS10155 (N0B18_10155) | - | 1906338..1906958 (+) | 621 | WP_003245105.1 | hypothetical protein | - |
| N0B18_RS10160 (N0B18_10160) | cwlC | 1907022..1907789 (-) | 768 | WP_014479843.1 | sporulation-specific N-acetylmuramoyl-L-alanine amidase | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 38059.21 Da Isoelectric Point: 4.7315
>NTDB_id=726835 N0B18_RS09885 WP_003245789.1 1860819..1861865(+) (recA) [Bacillus subtilis strain SRCM117109]
MSDRQAALDMALKQIEKQFGKGSIMKLGEKTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT
KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQGRENAKQFLKENKDIMLMIQEQ
IREHYGLDNNGVVQQQAEETQEELEFEE
MSDRQAALDMALKQIEKQFGKGSIMKLGEKTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT
KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQGRENAKQFLKENKDIMLMIQEQ
IREHYGLDNNGVVQQQAEETQEELEFEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=726835 N0B18_RS09885 WP_003245789.1 1860819..1861865(+) (recA) [Bacillus subtilis strain SRCM117109]
ATGAGTGATCGTCAGGCAGCCTTAGATATGGCTCTTAAACAAATAGAAAAACAGTTCGGCAAAGGTTCCATTATGAAACT
GGGAGAAAAGACAGATACAAGAATTTCTACTGTCCCAAGCGGCTCCCTCGCTCTTGATACAGCACTGGGAATTGGCGGAT
ATCCTCGCGGACGGATTATTGAAGTATACGGTCCTGAAAGCTCAGGTAAAACAACTGTGGCGCTTCATGCGATTGCTGAA
GTTCAGCAGCAGGGCGGACAAGCCGCGTTTATCGATGCGGAGCATGCGTTAGATCCGGTATACGCGCAAAAGCTCGGTGT
TAACATCGAGGAGCTTTTACTGTCTCAGCCTGACACAGGCGAGCAGGCGCTTGAAATTGCGGAAGCATTGGTTCGAAGCG
GGGCAGTTGACATTGTCGTTGTCGACTCTGTAGCCGCTCTCGTTCCGAAAGCGGAAATTGAAGGCGACATGGGAGATTCT
CATGTCGGTTTACAAGCACGCTTAATGTCTCAAGCGCTTCGTAAGCTTTCAGGGGCCATTAACAAATCGAAGACAATCGC
GATTTTCATTAACCAAATTCGTGAAAAAGTCGGCGTTATGTTCGGGAACCCGGAAACAACTCCTGGCGGCCGTGCGTTGA
AATTCTACTCTTCCGTGCGTCTTGAAGTGCGCCGTGCTGAACAGCTGAAACAAGGCAACGACGTAATGGGGAACAAAACG
AAAATCAAAGTCGTGAAAAACAAGGTGGCTCCGCCGTTCCGTACAGCCGAGGTTGACATTATGTACGGAGAAGGCATTTC
AAAAGAAGGCGAAATCATTGATCTAGGAACTGAACTTGATATCGTGCAAAAAAGCGGTTCATGGTACTCTTATGAAGAAG
AGCGTCTTGGCCAAGGCCGTGAAAATGCAAAACAATTCCTGAAAGAAAATAAAGATATCATGCTGATGATCCAGGAGCAA
ATTCGCGAACATTACGGCTTGGATAATAACGGAGTAGTGCAGCAGCAAGCTGAAGAGACACAAGAAGAACTCGAATTTGA
AGAATAA
ATGAGTGATCGTCAGGCAGCCTTAGATATGGCTCTTAAACAAATAGAAAAACAGTTCGGCAAAGGTTCCATTATGAAACT
GGGAGAAAAGACAGATACAAGAATTTCTACTGTCCCAAGCGGCTCCCTCGCTCTTGATACAGCACTGGGAATTGGCGGAT
ATCCTCGCGGACGGATTATTGAAGTATACGGTCCTGAAAGCTCAGGTAAAACAACTGTGGCGCTTCATGCGATTGCTGAA
GTTCAGCAGCAGGGCGGACAAGCCGCGTTTATCGATGCGGAGCATGCGTTAGATCCGGTATACGCGCAAAAGCTCGGTGT
TAACATCGAGGAGCTTTTACTGTCTCAGCCTGACACAGGCGAGCAGGCGCTTGAAATTGCGGAAGCATTGGTTCGAAGCG
GGGCAGTTGACATTGTCGTTGTCGACTCTGTAGCCGCTCTCGTTCCGAAAGCGGAAATTGAAGGCGACATGGGAGATTCT
CATGTCGGTTTACAAGCACGCTTAATGTCTCAAGCGCTTCGTAAGCTTTCAGGGGCCATTAACAAATCGAAGACAATCGC
GATTTTCATTAACCAAATTCGTGAAAAAGTCGGCGTTATGTTCGGGAACCCGGAAACAACTCCTGGCGGCCGTGCGTTGA
AATTCTACTCTTCCGTGCGTCTTGAAGTGCGCCGTGCTGAACAGCTGAAACAAGGCAACGACGTAATGGGGAACAAAACG
AAAATCAAAGTCGTGAAAAACAAGGTGGCTCCGCCGTTCCGTACAGCCGAGGTTGACATTATGTACGGAGAAGGCATTTC
AAAAGAAGGCGAAATCATTGATCTAGGAACTGAACTTGATATCGTGCAAAAAAGCGGTTCATGGTACTCTTATGAAGAAG
AGCGTCTTGGCCAAGGCCGTGAAAATGCAAAACAATTCCTGAAAGAAAATAAAGATATCATGCTGATGATCCAGGAGCAA
ATTCGCGAACATTACGGCTTGGATAATAACGGAGTAGTGCAGCAGCAAGCTGAAGAGACACAAGAAGAACTCGAATTTGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.