Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NYP54_RS07810 Genome accession   NZ_CP103983
Coordinates   1782208..1783236 (+) Length   342 a.a.
NCBI ID   WP_117002904.1    Uniprot ID   -
Organism   Cysteiniphilum sp. QT6929     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1777208..1788236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYP54_RS07795 (NYP54_07795) dnaG 1777633..1779417 (+) 1785 WP_283156038.1 DNA primase -
  NYP54_RS07800 (NYP54_07800) rpoD 1779761..1781674 (+) 1914 WP_117002906.1 RNA polymerase sigma factor RpoD -
  NYP54_RS07805 (NYP54_07805) - 1781731..1782120 (+) 390 WP_283156039.1 YcfL family protein -
  NYP54_RS07810 (NYP54_07810) recA 1782208..1783236 (+) 1029 WP_117002904.1 recombinase RecA Machinery gene
  NYP54_RS07815 (NYP54_07815) - 1783223..1783666 (+) 444 WP_283156040.1 regulatory protein RecX -
  NYP54_RS07825 (NYP54_07825) - 1783903..1786908 (-) 3006 WP_283157526.1 FAD-binding and (Fe-S)-binding domain-containing protein -
  NYP54_RS07830 (NYP54_07830) - 1787060..1787692 (-) 633 WP_283156041.1 MFS transporter -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 36728.03 Da        Isoelectric Point: 5.5411

>NTDB_id=726771 NYP54_RS07810 WP_117002904.1 1782208..1783236(+) (recA) [Cysteiniphilum sp. QT6929]
MSNKEQALNSALAQIERQFGKGSIMRMGDTDLAKDIDVISTGSIGLDIALGVGGLPKGRVVEIYGAESSGKTTLTLQAIA
QCQKNGGTAAFIDAEHALDPVYAEALGVDLKSLIVSQPDTGEQALEITDMLVRSGGVDIVVVDSVAALTPKAEIEGEMGD
SHMGLQARLMSQALRKLTANIKRSNTLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLEIRRGSPIKKGEEILGNE
TKVKVVKNKVSPPFKQAEFDILYGEGTSLEGELIDLGVKYNLVDKAGAWYSYNGDRIGQGKDNVRVYLKENPQVKESLHK
ALMTTLLPNTAKEKSVASDAEE

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=726771 NYP54_RS07810 WP_117002904.1 1782208..1783236(+) (recA) [Cysteiniphilum sp. QT6929]
ATGAGCAATAAAGAACAAGCATTAAACTCAGCGTTAGCGCAAATTGAAAGACAGTTTGGCAAAGGCTCAATTATGCGTAT
GGGTGATACCGATTTAGCTAAAGATATTGATGTTATTTCCACAGGATCAATTGGTTTAGATATCGCTCTAGGGGTTGGTG
GTTTACCAAAAGGACGTGTGGTTGAAATTTATGGCGCGGAATCTTCAGGTAAAACAACGCTGACACTACAAGCCATTGCC
CAGTGCCAAAAAAATGGCGGAACAGCTGCCTTTATTGATGCTGAGCATGCGCTTGATCCGGTATATGCCGAAGCTTTGGG
CGTTGACCTTAAAAGCCTGATCGTGTCACAACCAGATACAGGTGAGCAAGCGCTTGAGATTACTGATATGTTGGTGCGTT
CAGGTGGTGTTGATATTGTTGTTGTTGACTCGGTTGCTGCATTGACACCAAAAGCCGAAATTGAAGGTGAAATGGGTGAT
TCACATATGGGTTTGCAGGCGCGTTTAATGTCACAAGCCTTACGTAAATTAACAGCAAATATTAAGCGTTCTAATACATT
AGTTGTATTCATTAACCAGATTCGTATGAAGATCGGTGTGATGTTTGGCAACCCTGAAACAACCACAGGTGGTAATGCTT
TGAAGTTCTACGCATCAGTGCGTTTAGAGATTCGTCGTGGTAGCCCGATTAAAAAAGGCGAGGAAATTTTAGGGAATGAG
ACCAAGGTTAAAGTCGTTAAAAATAAAGTTTCGCCACCATTTAAGCAGGCAGAGTTTGATATTCTCTATGGTGAAGGAAC
GTCTCTTGAAGGAGAGTTAATTGATCTTGGGGTTAAATATAACCTAGTCGATAAAGCTGGTGCATGGTACAGCTACAATG
GTGATCGAATTGGACAAGGGAAAGATAATGTGCGTGTGTATCTGAAAGAAAATCCTCAGGTTAAGGAGAGTTTACACAAA
GCATTAATGACGACCTTGCTACCGAATACGGCAAAGGAAAAATCAGTAGCCAGCGATGCCGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.186

100

0.696
  recA Vibrio cholerae strain A1552

69.186

100

0.696
  recA Neisseria gonorrhoeae strain FA1090

74.684

92.398

0.69
  recA Neisseria gonorrhoeae MS11

74.684

92.398

0.69
  recA Neisseria gonorrhoeae MS11

74.684

92.398

0.69
  recA Acinetobacter baumannii D1279779

68.824

99.415

0.684
  recA Acinetobacter baylyi ADP1

68.824

99.415

0.684
  recA Glaesserella parasuis strain SC1401

67.63

100

0.684
  recA Pseudomonas stutzeri DSM 10701

68.437

99.123

0.678
  recA Ralstonia pseudosolanacearum GMI1000

69.207

95.906

0.664
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64

95.029

0.608
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.918

96.199

0.605
  recA Bacillus subtilis subsp. subtilis str. 168

64.968

91.813

0.596
  recA Helicobacter pylori 26695

63.722

92.69

0.591
  recA Helicobacter pylori strain NCTC11637

63.722

92.69

0.591
  recA Streptococcus pneumoniae R6

59.271

96.199

0.57
  recA Streptococcus pneumoniae Rx1

59.271

96.199

0.57
  recA Streptococcus pneumoniae D39

59.271

96.199

0.57
  recA Streptococcus pneumoniae TIGR4

59.271

96.199

0.57
  recA Streptococcus mitis SK321

61.199

92.69

0.567
  recA Streptococcus mutans UA159

59.938

94.152

0.564
  recA Latilactobacillus sakei subsp. sakei 23K

61.076

92.398

0.564
  recA Streptococcus mitis NCTC 12261

60.883

92.69

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.642

94.737

0.556
  recA Streptococcus pyogenes NZ131

59.19

93.86

0.556
  recA Lactococcus lactis subsp. cremoris KW2

57.716

94.737

0.547