Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   J3989_RS09890 Genome accession   NZ_AP024489
Coordinates   1994814..1997003 (-) Length   729 a.a.
NCBI ID   WP_207177364.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NIID777     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1989814..2002003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3989_RS09865 (NMNIID777_18490) - 1990254..1990388 (+) 135 Protein_1921 IS110 family transposase -
  J3989_RS09870 (NMNIID777_18500) - 1990452..1991564 (+) 1113 WP_207177000.1 IS5 family transposase -
  J3989_RS09875 (NMNIID777_18510) - 1991714..1992670 (+) 957 Protein_1923 IS5 family transposase -
  J3989_RS09880 (NMNIID777_18520) - 1992770..1993636 (+) 867 WP_207177004.1 IS110 family transposase -
  J3989_RS11105 - 1993693..1994259 (+) 567 Protein_1925 NnrS family protein -
  J3989_RS11110 - 1994339..1994767 (+) 429 WP_340638496.1 NnrS family protein -
  J3989_RS09890 (NMNIID777_18550) priA 1994814..1997003 (-) 2190 WP_207177364.1 primosomal protein N' Machinery gene
  J3989_RS09895 (NMNIID777_18560) - 1997142..1997924 (+) 783 WP_207177006.1 DsbC family protein -
  J3989_RS09900 (NMNIID777_18570) - 1998242..2000176 (-) 1935 WP_207177008.1 MacB family efflux pump subunit -
  J3989_RS09905 (NMNIID777_18580) - 2000242..2001420 (-) 1179 WP_002255779.1 MacA family efflux pump subunit -

Sequence

Protein


Download         Length: 729 a.a.        Molecular weight: 81162.97 Da        Isoelectric Point: 7.5766

>NTDB_id=72673 J3989_RS09890 WP_207177364.1 1994814..1997003(-) (priA) [Neisseria meningitidis strain NIID777]
MIYHRIAVNVPLSDGLLTYSHSEPLPQGMRVLVPFRNKTVVGMVWETDIAPDMDTARILSIQTTFLDEPPLPESWRDLLS
FTSRYYHYPTGQAVFAALPQGLKETRAVEMPQPPLFYALNEAGRAQTPPPARFNKKAALWDALLSGGMTMAALKQVNAQA
EKLIEDWAEQGWIETTEAAKPVLRSYHGQASHSEFVLNADQRQASDAIQTALGRFQPFLLYGITGSGKTEVYFDAMAKVL
AQGRQVLFLLPEINLTPQLLKRVENRFADVSTAVLHSQMAAGKRTQDYLRAMLGQAKLVIGTRLAVFTPMDDVGLIVVDE
EHDGSFKQDNELRYHARDLAVWRAKQSGCPVVLGSATPSLESWHKAQSGAYRLLQLTERAHTAAQLPQVDILNVGRLKLD
NGFSPQALQLLKQNFEAGGMSLVYLNRRGFAPALFCGDCGHTFGCPNCSAKMVLHQRARQLRCHHCDHREPIPFKCPDCG
NQDLTAVGHGTQRVEETLRAFLPKAAVVRVDRDSTAHKNDWADLYRRIADNKIDILVGTQMLAKGHDFARLNLVIVLNAD
GSLYSADFRAPERLFAELMQVSGRAGRADKPGKVLIQTQLPEHPVFAAVKAQDYAVFAENELNERQMFAMPPFGFQIAVR
ADALRVADAMEFLNAAKETLAPLLPASVSQFGAAPMLMVRLAERERAQVFLESTSRQDLHRAVSLWVQVLQQNRDGKIRW
SVDVDPQET

Nucleotide


Download         Length: 2190 bp        

>NTDB_id=72673 J3989_RS09890 WP_207177364.1 1994814..1997003(-) (priA) [Neisseria meningitidis strain NIID777]
ATGATCTACCACCGTATCGCCGTAAACGTGCCGCTTTCAGACGGTCTTTTAACTTATTCCCATTCCGAGCCGCTGCCGCA
GGGAATGCGGGTGCTTGTGCCTTTTCGCAATAAAACCGTGGTCGGGATGGTGTGGGAAACGGATATTGCGCCGGATATGG
ATACGGCGCGGATTTTGAGTATTCAGACGACCTTTTTAGACGAGCCGCCGTTGCCTGAAAGCTGGCGTGATTTGCTCTCG
TTTACGTCGCGTTATTACCACTATCCGACGGGGCAGGCGGTGTTTGCCGCGCTGCCGCAGGGTTTGAAGGAAACGCGCGC
GGTGGAAATGCCGCAGCCGCCGTTGTTTTACGCGCTGAACGAAGCGGGCAGGGCGCAAACGCCGCCGCCGGCGCGGTTCA
ACAAAAAAGCGGCTTTGTGGGACGCGCTGCTGTCGGGCGGGATGACGATGGCGGCGTTGAAGCAGGTAAACGCGCAGGCG
GAGAAATTGATCGAAGATTGGGCTGAACAAGGCTGGATTGAAACGACGGAAGCGGCGAAACCTGTATTGAGATCGTACCA
CGGGCAGGCTTCGCACTCTGAATTTGTGTTGAATGCCGACCAACGGCAGGCTTCCGATGCCATTCAGACGGCATTGGGAC
GCTTCCAACCGTTTCTGCTGTATGGCATCACCGGCAGCGGCAAGACCGAGGTGTATTTCGATGCGATGGCGAAAGTGTTG
GCGCAGGGGCGGCAGGTGTTGTTTCTGTTGCCCGAAATCAACCTCACGCCGCAGCTTTTGAAGCGGGTGGAAAACCGTTT
TGCCGACGTGTCGACCGCCGTGTTGCACAGTCAGATGGCGGCAGGCAAGCGCACGCAGGATTATTTGCGCGCGATGTTGG
GGCAGGCGAAATTGGTCATCGGCACGCGGCTGGCGGTGTTCACGCCGATGGATGATGTCGGGCTGATTGTGGTCGATGAG
GAACACGACGGCTCGTTCAAACAGGACAACGAATTGCGCTACCACGCCCGCGATTTGGCGGTGTGGCGGGCGAAGCAGAG
CGGCTGCCCCGTCGTGTTGGGCAGTGCCACGCCCAGCTTGGAGAGCTGGCACAAGGCGCAAAGTGGCGCGTACCGCCTGC
TGCAACTGACCGAACGCGCCCATACCGCCGCGCAACTGCCGCAAGTGGACATTCTCAACGTAGGCCGTCTGAAACTCGAC
AACGGTTTCTCGCCGCAAGCCTTGCAGCTTTTGAAACAGAATTTTGAAGCGGGCGGTATGTCGCTGGTGTACCTCAACCG
TCGCGGTTTCGCGCCCGCGCTGTTTTGCGGCGACTGCGGTCATACCTTCGGCTGCCCGAACTGCTCCGCCAAAATGGTGC
TGCACCAACGCGCCCGCCAACTGCGCTGCCACCACTGCGACCACCGCGAACCCATACCGTTCAAATGCCCCGACTGCGGT
AACCAAGACCTGACCGCCGTCGGCCACGGCACGCAGCGCGTCGAAGAAACCCTGCGCGCCTTCCTGCCCAAGGCAGCCGT
CGTCCGTGTTGACAGGGACAGCACCGCGCACAAAAACGACTGGGCGGATTTGTACCGCCGCATCGCCGACAACAAAATCG
ACATTTTGGTCGGCACGCAGATGCTCGCCAAAGGGCATGATTTCGCGCGGCTCAACCTCGTTATCGTGTTGAACGCTGAC
GGCAGCCTGTACAGCGCGGACTTTCGCGCCCCGGAAAGGCTGTTCGCCGAGCTGATGCAGGTGTCCGGCAGGGCGGGGCG
TGCCGACAAACCCGGCAAGGTGTTGATACAGACCCAACTGCCCGAACATCCCGTCTTCGCCGCCGTCAAAGCGCAGGACT
ACGCTGTGTTCGCCGAAAACGAATTGAACGAGCGGCAAATGTTCGCCATGCCGCCCTTTGGTTTTCAGATTGCTGTCCGC
GCCGATGCGCTGCGTGTTGCCGATGCGATGGAATTTCTCAACGCCGCCAAAGAAACCCTCGCCCCGCTTTTGCCCGCAAG
CGTTTCCCAGTTCGGCGCCGCCCCCATGCTGATGGTGCGCCTTGCCGAACGCGAACGTGCGCAAGTTTTCCTCGAATCGA
CATCTCGACAGGATTTGCACCGCGCCGTGAGTTTGTGGGTGCAGGTGTTGCAGCAAAACCGCGACGGCAAAATCAGATGG
TCGGTGGATGTCGATCCGCAGGAGACTTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(516-588)

3DNA-binding domain (3BD) (PriA_3primeBD)

(5-99)

DEAD/DEAH box helicase (DEAD)

(207-361)

Primosomal protein N C-terminal domain (PriA_C)

(632-726)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(445-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

36.8

100

0.379

Multiple sequence alignment