Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FGKAn22_RS04330 Genome accession   NZ_AP019536
Coordinates   903572..904588 (+) Length   338 a.a.
NCBI ID   WP_212786754.1    Uniprot ID   A0AAN1SYZ2
Organism   Ferrigenium kumadai strain An22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 898572..909588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGKAn22_RS04305 (FGKAn22_08490) - 898930..899592 (+) 663 WP_212786749.1 SPOR domain-containing protein -
  FGKAn22_RS04310 (FGKAn22_08500) - 899589..900122 (+) 534 WP_212786750.1 CvpA family protein -
  FGKAn22_RS04315 (FGKAn22_08510) purF 900154..901680 (+) 1527 WP_212786751.1 amidophosphoribosyltransferase -
  FGKAn22_RS04320 (FGKAn22_08520) - 901827..902999 (+) 1173 WP_212786752.1 O-succinylhomoserine sulfhydrylase -
  FGKAn22_RS04325 (FGKAn22_08530) pncC 902999..903490 (+) 492 WP_212786753.1 nicotinamide-nucleotide amidase -
  FGKAn22_RS04330 (FGKAn22_08540) recA 903572..904588 (+) 1017 WP_212786754.1 recombinase RecA Machinery gene
  FGKAn22_RS04335 (FGKAn22_08550) recX 904625..905113 (+) 489 WP_212786755.1 recombination regulator RecX -
  FGKAn22_RS04340 (FGKAn22_08560) alaS 905238..907862 (+) 2625 WP_212786756.1 alanine--tRNA ligase -
  FGKAn22_RS04345 (FGKAn22_08570) - 907914..908372 (+) 459 WP_212786757.1 response regulator -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 36370.68 Da        Isoelectric Point: 5.5249

>NTDB_id=72673 FGKAn22_RS04330 WP_212786754.1 903572..904588(+) (recA) [Ferrigenium kumadai strain An22]
MDDNKSKALAAALSQIEKQFGKGSIMRLGESDVAKDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVI
AEMQKMGGTAAFIDAEHALDPQYAQKLGVAVEDLLISQPDNGEQALEIADMLVRSSSVDVVVIDSVAALTPKAEIEGEMG
DAQMGLHARLMSQALRKLTANIKRSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKKGDEVIGN
ETRVKVVKNKVAPPFREAMFDILYGEGISREGEIIELGVQHKIVDKSGAWYAYQGDKIGQGKDNAREYLRENPHLALEIE
NRVREAVGVAALAAPNAE

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=72673 FGKAn22_RS04330 WP_212786754.1 903572..904588(+) (recA) [Ferrigenium kumadai strain An22]
ATGGATGACAACAAAAGCAAGGCACTCGCAGCGGCATTGAGCCAGATCGAAAAACAGTTCGGCAAGGGCTCCATCATGCG
CTTGGGCGAGAGCGATGTCGCAAAGGACATTCAGGTAGTGTCCACCGGCTCGCTGGGGCTGGACATCGCACTGGGCGTAG
GCGGCCTGCCGCGCGGACGTGTGGTGGAAATCTACGGACCGGAATCTTCCGGCAAGACCACCCTGACACTGCAAGTCATC
GCCGAGATGCAGAAGATGGGCGGCACTGCGGCGTTCATCGACGCGGAACACGCGCTCGACCCGCAATACGCTCAGAAGCT
TGGTGTGGCAGTGGAAGACCTGCTGATCTCTCAGCCGGACAACGGCGAGCAGGCGCTGGAGATCGCCGACATGCTGGTGC
GCTCTTCCTCGGTGGATGTAGTCGTGATCGACTCGGTCGCCGCGCTGACGCCCAAGGCCGAGATCGAAGGCGAGATGGGG
GATGCGCAGATGGGGTTGCACGCCCGCCTGATGTCGCAGGCGCTGCGCAAGCTGACCGCCAACATCAAGCGCTCCAACAC
GCTGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAATCCCGAAACCACCACCGGCGGTAACG
CGCTGAAGTTCTACGCCTCTGTGCGCCTCGACATCCGCCGCACCGGCGCGATCAAGAAGGGCGATGAGGTGATCGGCAAC
GAGACTCGCGTCAAGGTGGTGAAGAACAAGGTCGCTCCTCCGTTCCGCGAGGCGATGTTCGATATCCTCTACGGCGAGGG
CATCTCGCGCGAAGGCGAGATCATCGAGCTTGGCGTGCAGCACAAGATTGTCGACAAGTCCGGCGCGTGGTATGCCTATC
AGGGCGACAAGATCGGCCAGGGCAAGGACAACGCGCGCGAATACCTGCGCGAAAACCCCCACCTCGCGCTGGAGATCGAA
AACCGTGTCCGTGAGGCTGTCGGTGTTGCCGCGTTAGCCGCACCGAACGCGGAATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

80.878

94.379

0.763
  recA Pseudomonas stutzeri DSM 10701

74.194

100

0.749
  recA Acinetobacter baylyi ADP1

74.769

96.154

0.719
  recA Acinetobacter baumannii D1279779

73.538

96.154

0.707
  recA Vibrio cholerae strain A1552

73.538

96.154

0.707
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.538

96.154

0.707
  recA Neisseria gonorrhoeae MS11

72.34

97.337

0.704
  recA Neisseria gonorrhoeae MS11

72.34

97.337

0.704
  recA Neisseria gonorrhoeae strain FA1090

72.34

97.337

0.704
  recA Glaesserella parasuis strain SC1401

70.149

99.112

0.695
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.163

97.929

0.648
  recA Bacillus subtilis subsp. subtilis str. 168

65.337

96.45

0.63
  recA Helicobacter pylori strain NCTC11637

64.134

97.337

0.624
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.363

98.521

0.624
  recA Helicobacter pylori 26695

63.83

97.337

0.621
  recA Latilactobacillus sakei subsp. sakei 23K

61.89

97.041

0.601
  recA Streptococcus pyogenes NZ131

60.606

97.633

0.592
  recA Streptococcus pneumoniae Rx1

60.79

97.337

0.592
  recA Streptococcus pneumoniae D39

60.79

97.337

0.592
  recA Streptococcus pneumoniae R6

60.79

97.337

0.592
  recA Streptococcus pneumoniae TIGR4

60.79

97.337

0.592
  recA Lactococcus lactis subsp. cremoris KW2

60.486

97.337

0.589
  recA Streptococcus mitis SK321

60.486

97.337

0.589
  recA Streptococcus mitis NCTC 12261

60.486

97.337

0.589
  recA Streptococcus mutans UA159

59.819

97.929

0.586
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.923

96.154

0.586

Multiple sequence alignment