Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NYR52_RS09510 Genome accession   NZ_CP103866
Coordinates   1920534..1921619 (-) Length   361 a.a.
NCBI ID   WP_132220802.1    Uniprot ID   -
Organism   Laceyella sacchari strain FBKL4.014     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1915534..1926619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR52_RS09485 (NYR52_09485) - 1916511..1917185 (-) 675 WP_259435542.1 ATP-binding protein -
  NYR52_RS09490 (NYR52_09490) - 1917187..1917432 (-) 246 WP_022737610.1 hypothetical protein -
  NYR52_RS09495 (NYR52_09495) - 1917437..1918885 (-) 1449 WP_132220796.1 AAA family ATPase -
  NYR52_RS09500 (NYR52_09500) - 1918882..1919862 (-) 981 WP_132220798.1 metallophosphoesterase -
  NYR52_RS09505 (NYR52_09505) - 1919862..1920515 (-) 654 WP_022737607.1 RecX family transcriptional regulator -
  NYR52_RS09510 (NYR52_09510) recA 1920534..1921619 (-) 1086 WP_132220802.1 recombinase RecA Machinery gene
  NYR52_RS09515 (NYR52_09515) - 1921805..1922092 (+) 288 WP_375163200.1 metal-sulfur cluster assembly factor -
  NYR52_RS09520 (NYR52_09520) - 1922136..1923719 (-) 1584 WP_022737604.1 DEAD/DEAH box helicase -
  NYR52_RS09525 (NYR52_09525) - 1923716..1924969 (-) 1254 WP_132220806.1 competence/damage-inducible protein A -
  NYR52_RS09530 (NYR52_09530) pgsA 1925013..1925597 (-) 585 WP_022737602.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 39322.98 Da        Isoelectric Point: 6.6727

>NTDB_id=726263 NYR52_RS09510 WP_132220802.1 1920534..1921619(-) (recA) [Laceyella sacchari strain FBKL4.014]
MSDRRQALEMALRQIEKQFGKGSIMRMGEETTPQVETISSGALALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQRAGGTAAFIDAEHALDPVYAQKLGVNINELLLSQPDTGEQALEIAEALVRSGAVDIIIIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGIMFGNPETTPGGRALKFYSSVRLEVRRQETIKQGADMVGNRT
KIKVVKNKVAPPFKQAEVDIMFGEGISKEGSVLDIAAELDIVNKSGAWYSFEGDRLGQGRENAKQFLKDHPEISVKIENR
IRAHYDLPLTRVEEKPAEPAKEEKRGRKSKEKEETAPSLEA

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=726263 NYR52_RS09510 WP_132220802.1 1920534..1921619(-) (recA) [Laceyella sacchari strain FBKL4.014]
ATGTCAGATCGTCGTCAGGCGTTAGAAATGGCACTTAGACAAATAGAAAAGCAATTTGGCAAAGGCTCAATCATGCGGAT
GGGGGAAGAAACCACCCCGCAAGTGGAGACGATTTCCAGTGGGGCGCTGGCTCTGGATATTGCTCTGGGTGTCGGCGGAT
ATCCACGGGGTCGGATTATCGAAGTGTATGGACCTGAGTCTTCCGGTAAGACCACTGTCGCTTTGCATGCGATTGCGGAA
GTGCAACGCGCAGGAGGGACTGCGGCTTTCATTGATGCGGAACACGCGTTGGACCCTGTATATGCGCAAAAATTGGGTGT
TAACATCAACGAATTGTTGTTGTCCCAACCAGACACGGGGGAACAAGCGTTGGAGATCGCCGAAGCGTTGGTGCGTAGTG
GAGCCGTGGACATTATCATTATCGACTCTGTAGCGGCATTGGTGCCGAAAGCGGAAATCGAAGGGGAGATGGGTGACTCT
CATGTCGGTTTGCAAGCCCGTTTGATGTCCCAAGCGTTGCGCAAGCTTTCGGGAGCGATCAACAAGTCCAAAACCATCGC
CATCTTCATCAACCAAATTCGTGAAAAAGTGGGTATCATGTTCGGCAATCCAGAGACGACTCCGGGTGGACGGGCTCTGA
AATTCTATTCCAGCGTTCGCTTGGAAGTGCGCCGCCAAGAGACGATCAAACAAGGAGCGGACATGGTCGGTAACCGAACC
AAAATCAAAGTAGTTAAAAACAAGGTCGCACCTCCGTTTAAGCAAGCGGAAGTAGACATCATGTTCGGCGAGGGGATTTC
CAAAGAGGGAAGCGTCCTTGATATCGCGGCTGAACTGGACATTGTCAATAAGAGCGGAGCATGGTATTCCTTCGAGGGGG
ATCGCCTCGGACAGGGCCGTGAAAACGCCAAGCAGTTCCTCAAGGATCACCCAGAAATCTCAGTGAAGATTGAAAATCGG
ATTCGTGCGCACTACGATCTGCCCCTGACACGAGTTGAAGAGAAACCGGCAGAGCCGGCCAAGGAAGAGAAGCGCGGCCG
CAAGTCGAAAGAAAAAGAGGAGACCGCTCCTTCTCTTGAGGCGTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

81.957

90.582

0.742
  recA Latilactobacillus sakei subsp. sakei 23K

72.353

94.183

0.681
  recA Streptococcus mutans UA159

65.084

99.169

0.645
  recA Streptococcus pneumoniae Rx1

65.909

97.507

0.643
  recA Streptococcus pneumoniae D39

65.909

97.507

0.643
  recA Streptococcus pneumoniae R6

65.909

97.507

0.643
  recA Streptococcus pneumoniae TIGR4

65.909

97.507

0.643
  recA Streptococcus mitis NCTC 12261

68.182

91.413

0.623
  recA Streptococcus mitis SK321

67.879

91.413

0.621
  recA Streptococcus pyogenes NZ131

67.278

90.582

0.609
  recA Lactococcus lactis subsp. cremoris KW2

66.364

91.413

0.607
  recA Neisseria gonorrhoeae MS11

62

96.953

0.601
  recA Neisseria gonorrhoeae MS11

62

96.953

0.601
  recA Neisseria gonorrhoeae strain FA1090

62

96.953

0.601
  recA Pseudomonas stutzeri DSM 10701

60.997

94.46

0.576
  recA Vibrio cholerae strain A1552

64.688

88.643

0.573
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.688

88.643

0.573
  recA Helicobacter pylori 26695

58.96

95.845

0.565
  recA Helicobacter pylori strain NCTC11637

58.96

95.845

0.565
  recA Ralstonia pseudosolanacearum GMI1000

65.484

85.873

0.562
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.24

88.92

0.562
  recA Acinetobacter baylyi ADP1

60.299

92.798

0.56
  recA Glaesserella parasuis strain SC1401

63.323

88.366

0.56
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.35

90.305

0.554
  recA Acinetobacter baumannii D1279779

62.187

88.643

0.551
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.938

89.197

0.535