Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NYR97_RS18040 Genome accession   NZ_CP103836
Coordinates   4216760..4217794 (+) Length   344 a.a.
NCBI ID   WP_205391699.1    Uniprot ID   A0AAU0B7Q8
Organism   Xanthomonas hydrangeae strain 22-323     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4211760..4222794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR97_RS18030 (NYR97_17995) ubiB 4214160..4215836 (+) 1677 WP_205391701.1 2-polyprenylphenol 6-hydroxylase -
  NYR97_RS18035 (NYR97_18000) lexA 4215946..4216587 (+) 642 WP_205391700.1 transcriptional repressor LexA -
  NYR97_RS18040 (NYR97_18005) recA 4216760..4217794 (+) 1035 WP_205391699.1 recombinase RecA Machinery gene
  NYR97_RS18045 (NYR97_18010) recX 4218078..4218566 (+) 489 WP_205394869.1 recombination regulator RecX -
  NYR97_RS18050 (NYR97_18015) alaS 4218667..4221315 (+) 2649 WP_316695144.1 alanine--tRNA ligase -
  NYR97_RS18055 (NYR97_18020) csrA 4221455..4221667 (+) 213 WP_003481884.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37180.76 Da        Isoelectric Point: 5.3708

>NTDB_id=725854 NYR97_RS18040 WP_205391699.1 4216760..4217794(+) (recA) [Xanthomonas hydrangeae strain 22-323]
MDENKKRALSAALSQIEKQFGKGSVMRMGDRVIEAVEVIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIA
ECQKKGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSSSVDIVVVDSVAALTPKAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNTLVVFINQLRHKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIG
NQTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVEAKLVDKAGAWYSYGEERIGQGKDNARTYLRDNPQVAIKL
EAELREKFQPAEAPREAGDDAEKE

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=725854 NYR97_RS18040 WP_205391699.1 4216760..4217794(+) (recA) [Xanthomonas hydrangeae strain 22-323]
ATGGATGAGAACAAGAAGCGCGCCCTTTCCGCCGCACTGAGCCAGATCGAAAAGCAATTCGGCAAGGGCTCGGTGATGCG
CATGGGCGACCGTGTGATCGAGGCCGTCGAAGTCATTCCGACCGGCTCGCTGATGCTGGACATCGCACTGGGGATCGGTG
GCCTGCCCAAGGGCCGTGTGGTCGAAATCTACGGTCCGGAATCGTCGGGCAAGACCACCCTGACTCTGCAGGCGATTGCC
GAATGCCAGAAGAAGGGCGGCACCGCAGCCTTCATCGATGCCGAGCACGCACTGGATCCGATCTACGCCGCCAAGCTGGG
CGTCAACGTTGACGACCTGCTGCTTTCGCAGCCGGACACCGGTGAGCAGGCGCTGGAAATCGCCGACATGCTGGTGCGTT
CGAGCTCGGTGGACATCGTGGTGGTCGACTCGGTCGCCGCGCTGACCCCGAAGGCGGAAATCGAAGGCGAGATGGGTGAT
CAGTTGCCGGGTCTGCAGGCCCGTCTGATGAGCCAGGCGCTGCGCAAGCTGACCGGCAACATCAAGCGCTCCAACACCCT
GGTGGTCTTCATCAACCAGCTGCGCCACAAGATCGGCGTCATGATGCCGGGCCAGAGCCCGGAAGTGACCACCGGCGGCA
ATGCGCTGAAGTTCTACGCCTCGGTGCGTCTGGATATCCGTCGTATCGGCGCGATCAAGAAGGGCGATGAAATCATCGGC
AACCAGACCAAGATCAAGGTCGTCAAGAACAAGCTGGCGCCTCCGTTCAAGCAGGTCGTGACCGAAATTCTCTACGGCGA
AGGCATCAGCCGCGAGGGCGAATTGATCGACATGGGCGTGGAAGCCAAGCTGGTCGATAAGGCGGGCGCCTGGTACAGCT
ACGGCGAAGAGCGCATCGGGCAGGGCAAGGACAACGCCCGGACCTATCTGCGCGACAACCCGCAGGTTGCGATCAAGCTG
GAAGCCGAGCTGCGCGAGAAGTTCCAGCCCGCCGAAGCGCCGCGTGAAGCAGGCGACGACGCCGAGAAGGAATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

69.477

100

0.695
  recA Pseudomonas stutzeri DSM 10701

69.883

99.419

0.695
  recA Ralstonia pseudosolanacearum GMI1000

74.76

90.988

0.68
  recA Acinetobacter baumannii D1279779

71.341

95.349

0.68
  recA Vibrio cholerae strain A1552

70.245

94.767

0.666
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.245

94.767

0.666
  recA Glaesserella parasuis strain SC1401

64.826

100

0.648
  recA Neisseria gonorrhoeae MS11

68.098

94.767

0.645
  recA Neisseria gonorrhoeae MS11

68.098

94.767

0.645
  recA Neisseria gonorrhoeae strain FA1090

68.098

94.767

0.645
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.874

97.093

0.61
  recA Latilactobacillus sakei subsp. sakei 23K

61.976

97.093

0.602
  recA Bacillus subtilis subsp. subtilis str. 168

62.769

94.477

0.593
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.353

92.151

0.593
  recA Helicobacter pylori strain NCTC11637

60.843

96.512

0.587
  recA Helicobacter pylori 26695

60.542

96.512

0.584
  recA Streptococcus pneumoniae Rx1

60.671

95.349

0.578
  recA Streptococcus mitis SK321

60.671

95.349

0.578
  recA Streptococcus pneumoniae D39

60.671

95.349

0.578
  recA Streptococcus pneumoniae R6

60.671

95.349

0.578
  recA Streptococcus pneumoniae TIGR4

60.671

95.349

0.578
  recA Streptococcus pyogenes NZ131

60.303

95.93

0.578
  recA Streptococcus mitis NCTC 12261

60.366

95.349

0.576
  recA Streptococcus mutans UA159

60

95.93

0.576
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.879

95.93

0.555
  recA Lactococcus lactis subsp. cremoris KW2

58.769

94.477

0.555