Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NYR89_RS00770 Genome accession   NZ_CP103833
Coordinates   155569..156708 (+) Length   379 a.a.
NCBI ID   WP_279445926.1    Uniprot ID   -
Organism   Actinobacillus arthritidis strain CCUG24862     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 150569..161708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR89_RS00745 (NYR89_00745) - 151052..151502 (-) 451 Protein_142 DUF302 domain-containing protein -
  NYR89_RS00750 (NYR89_00750) - 151575..152165 (-) 591 WP_279445923.1 anthranilate synthase component II -
  NYR89_RS00755 (NYR89_00755) rmuC 152137..153771 (-) 1635 WP_279445924.1 DNA recombination protein RmuC -
  NYR89_RS00760 (NYR89_00760) - 153906..154872 (+) 967 Protein_145 aminodeoxychorismate synthase component I -
  NYR89_RS00765 (NYR89_00765) - 154850..155449 (+) 600 WP_279445925.1 aminotransferase class IV family protein -
  NYR89_RS00770 (NYR89_00770) recA 155569..156708 (+) 1140 WP_279445926.1 recombinase RecA Machinery gene
  NYR89_RS00775 (NYR89_00775) recX 156778..157233 (+) 456 WP_279445927.1 recombination regulator RecX -
  NYR89_RS00780 (NYR89_00780) yqfB 157226..157534 (+) 309 WP_279445929.1 N(4)-acetylcytidine aminohydrolase -
  NYR89_RS00785 (NYR89_00785) - 157531..158064 (+) 534 WP_279445930.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  NYR89_RS00790 (NYR89_00790) - 158057..158611 (+) 555 WP_279445931.1 Sua5/YciO/YrdC/YwlC family protein -
  NYR89_RS00795 (NYR89_00795) aroE 158613..159437 (+) 825 WP_279445932.1 shikimate dehydrogenase -
  NYR89_RS00820 (NYR89_00820) - 160142..160393 (+) 252 WP_279445933.1 accessory factor UbiK family protein -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 41018.72 Da        Isoelectric Point: 4.6788

>NTDB_id=725794 NYR89_RS00770 WP_279445926.1 155569..156708(+) (recA) [Actinobacillus arthritidis strain CCUG24862]
MATDNKKSQKNTTAVKQTDPEQKEKALVAALAQIEKQFGKGSIMRLGDTQALDIEAVSTGSIGLDATLGIGGLPMGRIVE
IYGPESSGKTTLTLSVIAQAQKTGKTCAFIDAEHALDPVYARKLGVDTDALLISQPDNGEQALEICDALVRSGAVDLIIV
DSVVALTPKAEIEGDMGDSHMGLQARLMSQALRKLTANIKATNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRL
DIRRSGVVKDGDEVIGSETKVKIVKNKVAPPFREVQFDIMYGEGIARMNELLILAEKNGFIQKAGAWFSYEGTKIGQGKN
NAIKWLKENPEIAEKIEQEIRQLLIANPEKHLASSSDDELSESDDVESFSDDSFNDEEL

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=725794 NYR89_RS00770 WP_279445926.1 155569..156708(+) (recA) [Actinobacillus arthritidis strain CCUG24862]
ATGGCAACGGACAACAAAAAGAGTCAAAAAAATACAACAGCAGTAAAACAAACAGATCCAGAACAAAAAGAAAAGGCATT
AGTCGCCGCGCTTGCTCAAATTGAAAAACAATTTGGTAAAGGTTCCATTATGCGTTTAGGCGATACGCAAGCACTTGATA
TTGAAGCGGTTTCAACCGGTTCAATCGGTTTGGATGCAACATTAGGTATCGGTGGTTTACCGATGGGACGTATTGTAGAA
ATCTATGGTCCGGAATCATCAGGTAAAACAACGTTAACGCTTTCTGTCATTGCTCAGGCACAAAAAACCGGAAAAACTTG
TGCGTTTATCGATGCGGAACACGCATTAGATCCTGTTTATGCACGTAAATTAGGTGTGGATACCGATGCGTTATTAATTT
CACAACCGGATAACGGTGAACAGGCTTTAGAAATCTGTGACGCGTTAGTGCGTTCTGGTGCGGTTGATTTAATTATTGTG
GACTCGGTTGTCGCATTAACACCGAAAGCGGAAATTGAAGGCGATATGGGTGATTCTCATATGGGCTTACAAGCGCGTTT
AATGTCACAAGCATTACGTAAATTAACAGCAAATATTAAAGCGACTAACTGTTTAGTGGTGTTCATCAACCAAATTCGTA
TGAAAATTGGTGTGATGTTCGGTAATCCAGAAACGACAACTGGTGGTAACGCACTTAAATTCTATGCTTCGGTACGTTTA
GATATTCGCCGTTCAGGTGTGGTAAAAGACGGTGATGAGGTTATCGGTAGCGAAACGAAAGTGAAAATCGTGAAGAATAA
AGTTGCTCCGCCATTCCGTGAAGTACAATTTGATATTATGTACGGCGAAGGTATCGCTCGTATGAACGAGTTACTTATCC
TTGCGGAGAAAAATGGTTTTATTCAGAAAGCCGGTGCATGGTTCTCTTATGAAGGAACAAAAATCGGTCAAGGTAAAAAT
AATGCGATTAAATGGTTAAAAGAAAATCCTGAGATTGCAGAAAAAATTGAACAAGAGATTCGACAATTATTAATTGCTAA
TCCGGAAAAACATTTAGCTTCATCAAGCGATGATGAGTTATCAGAATCAGATGATGTGGAGAGTTTTTCTGATGATTCAT
TTAATGACGAAGAGTTATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(25-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

84.367

97.889

0.826
  recA Acinetobacter baylyi ADP1

70.977

91.821

0.652
  recA Vibrio cholerae strain A1552

70.201

92.084

0.646
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.201

92.084

0.646
  recA Acinetobacter baumannii D1279779

71.386

89.446

0.639
  recA Pseudomonas stutzeri DSM 10701

69.767

90.765

0.633
  recA Neisseria gonorrhoeae MS11

68.235

89.71

0.612
  recA Neisseria gonorrhoeae MS11

68.235

89.71

0.612
  recA Neisseria gonorrhoeae strain FA1090

68.235

89.71

0.612
  recA Ralstonia pseudosolanacearum GMI1000

69.841

83.113

0.58
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.988

88.654

0.567
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.099

90.501

0.562
  recA Streptococcus mitis NCTC 12261

59.429

92.348

0.549
  recA Streptococcus mitis SK321

59.143

92.348

0.546
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.121

87.071

0.541
  recA Streptococcus mutans UA159

59.292

89.446

0.53
  recA Helicobacter pylori strain NCTC11637

60.909

87.071

0.53
  recA Streptococcus pyogenes NZ131

58.824

89.71

0.528
  recA Bacillus subtilis subsp. subtilis str. 168

62.5

84.433

0.528
  recA Helicobacter pylori 26695

60.606

87.071

0.528
  recA Streptococcus pneumoniae D39

61.728

85.488

0.528
  recA Streptococcus pneumoniae R6

61.728

85.488

0.528
  recA Streptococcus pneumoniae TIGR4

61.728

85.488

0.528
  recA Streptococcus pneumoniae Rx1

61.728

85.488

0.528
  recA Lactococcus lactis subsp. cremoris KW2

55.652

91.029

0.507
  recA Latilactobacillus sakei subsp. sakei 23K

55.102

90.501

0.499