Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NYQ11_RS05490 Genome accession   NZ_CP103793
Coordinates   1148119..1149171 (+) Length   350 a.a.
NCBI ID   WP_103210431.1    Uniprot ID   -
Organism   Microbacterium testaceum strain D12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1143119..1154171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYQ11_RS05465 (NYQ11_05475) - 1143289..1146009 (+) 2721 WP_289942201.1 DNA translocase FtsK -
  NYQ11_RS05470 (NYQ11_05480) pgsA 1146009..1146596 (+) 588 WP_116238384.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NYQ11_RS05475 (NYQ11_05485) - 1146593..1147120 (+) 528 WP_103210426.1 CinA family protein -
  NYQ11_RS05480 (NYQ11_05490) - 1147293..1147601 (+) 309 WP_055835145.1 helix-turn-helix transcriptional regulator -
  NYQ11_RS05485 (NYQ11_05495) - 1147611..1147835 (+) 225 WP_103210429.1 DUF3046 domain-containing protein -
  NYQ11_RS05490 (NYQ11_05500) recA 1148119..1149171 (+) 1053 WP_103210431.1 recombinase RecA Machinery gene
  NYQ11_RS05495 (NYQ11_05505) - 1149171..1150049 (+) 879 WP_289942210.1 regulatory protein RecX -
  NYQ11_RS05500 (NYQ11_05510) - 1150088..1152664 (-) 2577 WP_289942211.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37271.65 Da        Isoelectric Point: 5.8296

>NTDB_id=725152 NYQ11_RS05490 WP_103210431.1 1148119..1149171(+) (recA) [Microbacterium testaceum strain D12]
MPSPAEREKALESALAQIDRQFGKGSVMRLGSDDRAPIETIPTGSVALDVALGIGGLPRGRIIEIYGPESSGKTTLTLHA
IANAQRAGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTGEQALEIADMLIRSGAIDLVVIDSVAALVPEAEIKGEM
GDSHVGLQARLMSQALRKLTGGLNTTKTTAIFINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTEAVG
NRTRVKVVKNKMAPPFKQAEFDILYGVGISREGSLIDFGVEHAIVKKSGAWYTYDGEQLGQGKENARNFLIKNPDIAEEI
ETKIKTKMGIGGAPVASAPADDELAARRPA

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=725152 NYQ11_RS05490 WP_103210431.1 1148119..1149171(+) (recA) [Microbacterium testaceum strain D12]
ATGCCCTCACCCGCAGAGCGCGAAAAGGCCCTCGAGTCCGCGCTGGCTCAGATCGACCGTCAGTTCGGAAAGGGCTCGGT
CATGCGACTGGGCAGCGACGATCGTGCGCCCATCGAGACCATTCCCACGGGCTCCGTCGCTCTCGACGTCGCCCTCGGCA
TCGGCGGTCTGCCTCGCGGCCGCATCATCGAGATCTACGGCCCGGAGTCGTCGGGAAAGACCACGTTGACGCTTCACGCG
ATCGCCAACGCCCAGCGCGCGGGCGGCATCGCCGCTTTCATCGATGCTGAGCACGCTCTCGACCCCGAATACGCGAAGAA
GCTCGGCGTCGACATCGACGCCCTTCTCGTGTCTCAGCCCGACACCGGTGAGCAGGCGCTCGAGATCGCCGACATGCTGA
TCCGCTCCGGCGCGATCGATCTCGTCGTCATCGACTCGGTCGCCGCCCTGGTTCCCGAGGCCGAGATCAAGGGTGAGATG
GGCGACTCGCACGTCGGCCTGCAGGCTCGCCTCATGTCGCAGGCGCTGCGAAAGCTCACCGGTGGTCTGAACACCACGAA
GACGACGGCGATCTTCATCAACCAGCTGCGCGAGAAGATCGGCGTCTTCTTCGGCTCGCCCGAGACCACGGCCGGTGGAA
AGGCGCTCAAGTTCTACGCGTCGGTGCGACTCGACATCCGTCGCATCGAGACGCTGAAGGACGGTACCGAGGCCGTAGGT
AACCGCACGCGCGTCAAGGTCGTCAAGAACAAGATGGCGCCGCCGTTCAAGCAGGCGGAGTTCGACATTCTCTACGGTGT
GGGTATCTCGCGTGAGGGAAGCCTCATCGACTTCGGGGTCGAGCACGCCATCGTCAAGAAGTCGGGCGCCTGGTACACCT
ACGATGGCGAGCAGCTCGGTCAGGGCAAAGAGAACGCGCGCAATTTCCTCATCAAGAACCCCGATATCGCGGAAGAGATC
GAGACGAAGATCAAAACCAAGATGGGCATCGGTGGCGCTCCCGTTGCCAGTGCGCCGGCAGACGACGAGCTCGCCGCGCG
GCGCCCGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

65.782

96.857

0.637
  recA Acinetobacter baumannii D1279779

65.875

96.286

0.634
  recA Bacillus subtilis subsp. subtilis str. 168

67.178

93.143

0.626
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.201

96.571

0.62
  recA Acinetobacter baylyi ADP1

67.081

92

0.617
  recA Neisseria gonorrhoeae MS11

65.951

93.143

0.614
  recA Neisseria gonorrhoeae MS11

65.951

93.143

0.614
  recA Neisseria gonorrhoeae strain FA1090

65.951

93.143

0.614
  recA Vibrio cholerae strain A1552

67.085

91.143

0.611
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.085

91.143

0.611
  recA Streptococcus mitis NCTC 12261

61.919

98.286

0.609
  recA Streptococcus mitis SK321

61.272

98.857

0.606
  recA Ralstonia pseudosolanacearum GMI1000

67.412

89.429

0.603
  recA Latilactobacillus sakei subsp. sakei 23K

61.834

96.571

0.597
  recA Helicobacter pylori strain NCTC11637

63.333

94.286

0.597
  recA Streptococcus pneumoniae Rx1

63.333

94.286

0.597
  recA Streptococcus pneumoniae D39

63.333

94.286

0.597
  recA Streptococcus pneumoniae R6

63.333

94.286

0.597
  recA Streptococcus pneumoniae TIGR4

63.333

94.286

0.597
  recA Helicobacter pylori 26695

63.333

94.286

0.597
  recA Lactococcus lactis subsp. cremoris KW2

63.333

94.286

0.597
  recA Glaesserella parasuis strain SC1401

61.357

96.857

0.594
  recA Streptococcus pyogenes NZ131

62.614

94

0.589
  recA Streptococcus mutans UA159

62.006

94

0.583
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.006

94

0.583
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.062

91.429

0.54