Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   myaer102_RS27155 Genome accession   NZ_AP019314
Coordinates   5271563..5272630 (+) Length   355 a.a.
NCBI ID   WP_125732242.1    Uniprot ID   A0A3G9K7Z8
Organism   Microcystis viridis NIES-102     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5266563..5277630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  myaer102_RS27135 (myaer102_49600) - 5267482..5267898 (+) 417 WP_002751648.1 XisH family protein -
  myaer102_RS27140 (myaer102_49610) - 5267886..5268221 (+) 336 WP_002748301.1 XisI protein -
  myaer102_RS27145 (myaer102_49620) - 5268393..5269484 (+) 1092 Protein_5116 ISAs1 family transposase -
  myaer102_RS27150 (myaer102_49630) - 5270482..5271435 (+) 954 WP_125732240.1 aldo/keto reductase -
  myaer102_RS27155 (myaer102_49640) recA 5271563..5272630 (+) 1068 WP_125732242.1 recombinase RecA Machinery gene
  myaer102_RS27160 (myaer102_49650) - 5272654..5273250 (-) 597 WP_002798714.1 hypothetical protein -
  myaer102_RS27165 (myaer102_49660) - 5273294..5274163 (-) 870 WP_125732244.1 bile acid:sodium symporter family protein -
  myaer102_RS27170 (myaer102_49670) - 5274457..5274636 (-) 180 WP_002759146.1 hypothetical protein -
  myaer102_RS27175 (myaer102_49680) - 5274765..5274977 (+) 213 WP_232023717.1 hypothetical protein -
  myaer102_RS27180 (myaer102_49690) - 5275787..5276260 (+) 474 WP_002795611.1 CRR6 family NdhI maturation factor -
  myaer102_RS27185 (myaer102_49700) - 5276355..5277563 (+) 1209 WP_125732248.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38242.65 Da        Isoelectric Point: 4.7005

>NTDB_id=72413 myaer102_RS27155 WP_125732242.1 5271563..5272630(+) (recA) [Microcystis viridis NIES-102]
MATMTNNSDRDKALGLVLTQIERNFGKGSIMRLGDATRMRVETVPSGALTLDMALGGGLPKGRIVEIYGPESSGKTTLAL
HAIAEVQKAGGVAAFVDAEHALDPTYSEDLGVDINNLLVAQPDTGEAALEIVDQLVRSSAVDIVVIDSVAALVPRAEIEG
EMGDNQVGLQARLMSKALRKIAGNIGKSGCVVIFLNQLRQKIGVTYGNPEVTTGGTALKFYASVRLDIRRIQTLKKGTEG
EYGIRAKVKVAKNKVAPPFRIAEFDIIFGKGISQVGCMLDIAEQTNVVTRKGAWYSYNGENIAQGRDNAVKYLEERPEVA
AEIEKLLRDKLDMGSVPFPTEPADEDDEDELEPEI

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=72413 myaer102_RS27155 WP_125732242.1 5271563..5272630(+) (recA) [Microcystis viridis NIES-102]
ATGGCGACAATGACAAATAATTCCGATCGAGATAAGGCCTTAGGTTTAGTCTTAACTCAAATCGAGCGCAACTTTGGCAA
AGGTTCGATTATGCGTTTAGGAGACGCCACCCGGATGCGGGTGGAAACCGTGCCTAGTGGTGCTTTAACCCTAGATATGG
CGTTGGGTGGCGGTTTACCGAAGGGCCGCATCGTCGAAATTTACGGGCCGGAAAGTTCTGGAAAAACCACCTTAGCCCTC
CATGCGATCGCAGAAGTGCAGAAAGCTGGGGGAGTGGCGGCCTTTGTCGATGCGGAACACGCTTTAGATCCCACCTATTC
GGAAGATTTAGGGGTAGATATCAATAATTTACTGGTGGCACAACCGGATACGGGGGAGGCTGCCTTAGAAATAGTTGACC
AGTTAGTGCGTTCTTCGGCCGTGGATATCGTTGTCATCGACTCGGTGGCCGCTTTAGTGCCGCGGGCGGAAATTGAAGGG
GAAATGGGGGATAATCAGGTGGGTTTGCAGGCCCGTTTGATGAGTAAAGCCCTGCGAAAAATTGCTGGTAATATTGGTAA
ATCCGGTTGTGTGGTGATTTTCCTCAACCAACTGCGGCAAAAAATCGGTGTCACCTACGGCAATCCTGAAGTGACCACCG
GAGGAACGGCCTTAAAATTTTATGCCTCGGTACGTTTAGATATCCGTCGCATTCAAACTTTGAAAAAAGGCACGGAAGGG
GAATACGGAATTCGGGCTAAAGTTAAGGTGGCTAAAAATAAAGTCGCGCCTCCTTTCCGGATTGCTGAATTTGATATTAT
CTTCGGTAAAGGCATTTCCCAGGTGGGTTGTATGCTCGATATCGCCGAACAAACTAACGTGGTTACTCGTAAAGGGGCAT
GGTATAGCTATAATGGCGAAAATATTGCCCAGGGTCGCGATAATGCCGTTAAATATCTCGAAGAAAGGCCAGAAGTAGCG
GCAGAAATTGAGAAGTTATTGCGGGATAAATTAGACATGGGTTCGGTTCCTTTCCCCACGGAACCGGCCGACGAGGACGA
TGAGGACGAGCTGGAACCAGAAATCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3G9K7Z8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

61.143

98.592

0.603
  recA Acinetobacter baumannii D1279779

60.116

97.465

0.586
  recA Pseudomonas stutzeri DSM 10701

60.465

96.901

0.586
  recA Ralstonia pseudosolanacearum GMI1000

62.162

93.803

0.583
  recA Latilactobacillus sakei subsp. sakei 23K

57.637

97.746

0.563
  recA Helicobacter pylori 26695

57.471

98.028

0.563
  recA Helicobacter pylori strain NCTC11637

57.471

98.028

0.563
  recA Neisseria gonorrhoeae MS11

56.857

98.592

0.561
  recA Neisseria gonorrhoeae MS11

56.857

98.592

0.561
  recA Neisseria gonorrhoeae strain FA1090

56.857

98.592

0.561
  recA Glaesserella parasuis strain SC1401

57.061

97.746

0.558
  recA Streptococcus pneumoniae TIGR4

56.25

99.155

0.558
  recA Streptococcus pneumoniae Rx1

56.25

99.155

0.558
  recA Streptococcus pneumoniae D39

56.25

99.155

0.558
  recA Streptococcus pneumoniae R6

56.25

99.155

0.558
  recA Bacillus subtilis subsp. subtilis str. 168

61.3

90.986

0.558
  recA Streptococcus mitis SK321

56.16

98.31

0.552
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.209

94.366

0.549
  recA Vibrio cholerae strain A1552

59.202

91.831

0.544
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.202

91.831

0.544
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.202

97.465

0.538
  recA Lactococcus lactis subsp. cremoris KW2

57.576

92.958

0.535
  recA Streptococcus mitis NCTC 12261

57.975

91.831

0.532
  recA Streptococcus pyogenes NZ131

57.012

92.394

0.527
  recA Streptococcus mutans UA159

56.481

91.268

0.515
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.312

90.141

0.499

Multiple sequence alignment