Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GYH29_RS06550 Genome accession   NZ_AP019312
Coordinates   1397616..1398668 (-) Length   350 a.a.
NCBI ID   WP_043591738.1    Uniprot ID   A0A0J6K9D4
Organism   Chromobacterium haemolyticum strain CH06-BL     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1392616..1403668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYH29_RS06530 (CH06BL_12880) - 1393323..1393808 (-) 486 WP_161523393.1 GNAT family N-acetyltransferase -
  GYH29_RS06535 (CH06BL_12890) alaS 1393981..1396614 (-) 2634 WP_019100542.1 alanine--tRNA ligase -
  GYH29_RS06540 (CH06BL_12900) - 1396691..1397149 (-) 459 WP_043591741.1 SRPBCC domain-containing protein -
  GYH29_RS06545 (CH06BL_12910) recX 1397152..1397607 (-) 456 WP_043591739.1 recombination regulator RecX -
  GYH29_RS06550 (CH06BL_12920) recA 1397616..1398668 (-) 1053 WP_043591738.1 recombinase RecA Machinery gene
  GYH29_RS06555 (CH06BL_12930) hrcA 1398975..1399997 (+) 1023 WP_019100546.1 heat-inducible transcriptional repressor HrcA -
  GYH29_RS06560 (CH06BL_12940) mltB 1400269..1401279 (+) 1011 WP_019100547.1 lytic murein transglycosylase B -
  GYH29_RS06565 (CH06BL_12950) dnaX 1401353..1403227 (+) 1875 WP_019100548.1 DNA polymerase III subunit gamma/tau -
  GYH29_RS06570 (CH06BL_12960) - 1403235..1403573 (+) 339 WP_019100549.1 YbaB/EbfC family nucleoid-associated protein -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37869.22 Da        Isoelectric Point: 4.9618

>NTDB_id=72377 GYH29_RS06550 WP_043591738.1 1397616..1398668(-) (recA) [Chromobacterium haemolyticum strain CH06-BL]
MASEDKSKALAAALAQIEKQFGKGSIMRMSDNQINENLQVVSTGSLSLDLALGVGGLPRGRVVEIYGPESSGKTTLCLQA
VAEMQKLGGTCAYIDAENALDPQYAQKLGVKVDDLLISQPDTGEQALEICDMLVRSSGVDLIVIDSVAALVPKAEIEGEM
GDSHVGLQARLMSQALRKLTGNIKRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGGIKKGEEVIG
NDTRVKVVKNKVSPPFRQADFEILYGEGISRQGEIIELGVKHGFIDKSGAWYAYNGQKIGQGKDNTREWLKSNPEIAAEV
ERKIRDAVGIKVEITEGQPDEEFADDALDA

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=72377 GYH29_RS06550 WP_043591738.1 1397616..1398668(-) (recA) [Chromobacterium haemolyticum strain CH06-BL]
ATGGCATCCGAAGACAAGAGCAAAGCGTTGGCCGCGGCCCTTGCCCAGATTGAAAAGCAATTTGGCAAGGGTTCGATCAT
GCGCATGAGCGACAACCAGATCAACGAAAACCTGCAGGTGGTCTCCACTGGCTCGCTGAGTCTGGACTTGGCGCTTGGCG
TCGGCGGCCTGCCGCGCGGCCGCGTCGTGGAAATCTACGGCCCGGAGTCGTCCGGTAAAACCACCCTGTGTCTACAAGCG
GTGGCCGAGATGCAAAAATTGGGCGGCACCTGCGCCTACATCGACGCGGAAAACGCGCTGGACCCGCAATATGCGCAAAA
GCTGGGCGTCAAGGTCGACGACCTGCTGATCTCGCAGCCGGACACCGGCGAGCAGGCGCTGGAAATCTGCGACATGCTGG
TGCGCTCCAGCGGCGTCGATCTGATCGTGATCGACTCGGTGGCCGCCTTGGTGCCCAAGGCTGAAATCGAAGGCGAGATG
GGCGACAGCCACGTGGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTGACCGGCAACATCAAGCGCACCAA
CACCCTGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAACCCGGAAACCACCACCGGCGGCA
ACGCGCTGAAGTTCTACGCCTCCGTGCGCCTGGACATCCGCCGCACCGGCGGCATCAAGAAGGGCGAGGAAGTGATCGGC
AACGACACCCGCGTCAAAGTGGTGAAGAACAAGGTGTCGCCGCCGTTCCGCCAGGCTGATTTCGAAATCCTGTACGGCGA
GGGCATCTCCCGCCAGGGCGAAATCATCGAGCTGGGCGTCAAGCACGGCTTCATCGACAAGTCCGGCGCCTGGTACGCCT
ACAACGGCCAGAAGATCGGCCAGGGCAAGGACAACACCCGCGAGTGGCTGAAGTCCAACCCGGAAATCGCCGCCGAAGTG
GAACGCAAGATCCGCGACGCAGTGGGCATCAAAGTGGAAATCACCGAAGGCCAGCCGGACGAAGAGTTCGCGGACGACGC
GCTCGACGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J6K9D4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

77.581

96.857

0.751
  recA Neisseria gonorrhoeae strain FA1090

77.581

96.857

0.751
  recA Neisseria gonorrhoeae MS11

77.581

96.857

0.751
  recA Ralstonia pseudosolanacearum GMI1000

78.981

89.714

0.709
  recA Pseudomonas stutzeri DSM 10701

70.605

99.143

0.7
  recA Acinetobacter baylyi ADP1

67.442

98.286

0.663
  recA Glaesserella parasuis strain SC1401

71.077

92.857

0.66
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.517

92.286

0.66
  recA Vibrio cholerae strain A1552

71.517

92.286

0.66
  recA Acinetobacter baumannii D1279779

69.659

92.286

0.643
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.537

96.857

0.606
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.575

95.429

0.597
  recA Helicobacter pylori 26695

61.652

96.857

0.597
  recA Helicobacter pylori strain NCTC11637

61.29

97.429

0.597
  recA Latilactobacillus sakei subsp. sakei 23K

63.333

94.286

0.597
  recA Bacillus subtilis subsp. subtilis str. 168

62.27

93.143

0.58
  recA Lactococcus lactis subsp. cremoris KW2

60.606

94.286

0.571
  recA Streptococcus pneumoniae D39

56.056

100

0.569
  recA Streptococcus pneumoniae TIGR4

56.056

100

0.569
  recA Streptococcus pneumoniae R6

56.056

100

0.569
  recA Streptococcus pneumoniae Rx1

56.056

100

0.569
  recA Streptococcus mitis NCTC 12261

58.017

98

0.569
  recA Streptococcus mutans UA159

59.819

94.571

0.566
  recA Streptococcus mitis SK321

58.788

94.286

0.554
  recA Streptococcus pyogenes NZ131

59.202

93.143

0.551
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.492

93.429

0.537

Multiple sequence alignment