Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   EoCCA6_RS06650 Genome accession   NZ_AP019007
Coordinates   1411185..1412243 (-) Length   352 a.a.
NCBI ID   WP_104950255.1    Uniprot ID   -
Organism   Enterobacter oligotrophicus strain CCA6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1406185..1417243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EoCCA6_RS06635 csrA 1407430..1407615 (-) 186 WP_000906486.1 carbon storage regulator CsrA -
  EoCCA6_RS06640 alaS 1407857..1410484 (-) 2628 WP_152081997.1 alanine--tRNA ligase -
  EoCCA6_RS06645 recX 1410616..1411116 (-) 501 WP_152081998.1 recombination regulator RecX -
  EoCCA6_RS06650 recA 1411185..1412243 (-) 1059 WP_104950255.1 recombinase RecA Machinery gene
  EoCCA6_RS06655 pncC 1412333..1412830 (-) 498 WP_152081999.1 nicotinamide-nucleotide amidase -
  EoCCA6_RS06660 - 1412960..1413838 (-) 879 WP_152082000.1 metal ABC transporter substrate-binding protein -
  EoCCA6_RS06665 - 1413853..1414713 (-) 861 WP_152082001.1 metal ABC transporter permease -
  EoCCA6_RS06670 - 1414710..1415363 (-) 654 WP_152082002.1 metal ABC transporter ATP-binding protein -
  EoCCA6_RS06675 mltB 1415623..1416723 (-) 1101 WP_168927636.1 lytic murein transglycosylase B -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37880.34 Da        Isoelectric Point: 4.8134

>NTDB_id=72034 EoCCA6_RS06650 WP_104950255.1 1411185..1412243(-) (recA) [Enterobacter oligotrophicus strain CCA6]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRTMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFFGELVDLGVKEKLIEKAGAWYSYNGDKIGQGKANAISWLKENPAAAKEI
EKKVRELLLNNQDSKPDFVVDAADAEETNEDF

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=72034 EoCCA6_RS06650 WP_104950255.1 1411185..1412243(-) (recA) [Enterobacter oligotrophicus strain CCA6]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGCACCATGGATGTAGAAACGATCTCCACCGGCTCGCTTTCTCTCGATATCGCGCTGGGTG
CGGGCGGTCTGCCGATGGGCCGTATCGTAGAAATCTACGGACCGGAATCCTCGGGTAAAACGACCCTGACGCTGCAGGTT
ATTGCAGCGGCACAGCGCGAAGGTAAAACCTGTGCGTTCATCGATGCCGAGCACGCGCTTGACCCTGTCTATGCCCGTAA
GCTGGGTGTCGATATCGACAACCTGCTGTGCTCCCAGCCGGACACCGGTGAGCAGGCGCTGGAAATTTGTGACGCGCTGG
CACGTTCCGGTGCCGTTGACGTTATCGTGGTCGACTCCGTTGCCGCTCTGACGCCAAAAGCCGAAATCGAAGGCGAAATC
GGTGACTCACACATGGGCCTCGCGGCACGTATGATGAGTCAGGCGATGCGTAAGCTGGCCGGTAACCTCAAGCAGTCCAA
TACGCTGCTGATCTTTATCAACCAGATCCGTATGAAAATTGGTGTGATGTTCGGTAACCCGGAAACCACCACCGGTGGTA
ACGCACTGAAATTCTATGCCTCTGTCCGTCTGGATATCCGCCGTATCGGTGCGGTGAAAGAGGGTGAGAACGTGGTCGGT
AGCGAAACCCGCGTGAAGGTGGTGAAGAACAAAATCGCAGCACCGTTCAAACAGGCTGAATTCCAGATCCTTTACGGTGA
AGGTATCAACTTCTTTGGCGAACTGGTTGACCTGGGCGTGAAAGAGAAGCTGATTGAAAAAGCGGGCGCATGGTACAGCT
ACAACGGCGATAAAATTGGTCAGGGTAAAGCGAATGCGATCTCCTGGCTGAAAGAGAACCCGGCTGCAGCGAAAGAGATT
GAGAAGAAAGTGCGTGAGCTGCTGCTGAACAACCAGGACTCTAAACCTGATTTCGTGGTGGATGCCGCGGATGCGGAAGA
GACCAACGAAGACTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

85.196

94.034

0.801
  recA Vibrio cholerae O1 biovar El Tor strain E7946

85.196

94.034

0.801
  recA Pseudomonas stutzeri DSM 10701

72.832

98.295

0.716
  recA Acinetobacter baumannii D1279779

70.774

99.148

0.702
  recA Acinetobacter baylyi ADP1

74.39

93.182

0.693
  recA Glaesserella parasuis strain SC1401

69.075

98.295

0.679
  recA Neisseria gonorrhoeae MS11

69.632

92.614

0.645
  recA Neisseria gonorrhoeae MS11

69.632

92.614

0.645
  recA Neisseria gonorrhoeae strain FA1090

69.632

92.614

0.645
  recA Ralstonia pseudosolanacearum GMI1000

70.74

88.352

0.625
  recA Helicobacter pylori strain NCTC11637

61.721

95.739

0.591
  recA Helicobacter pylori 26695

61.424

95.739

0.588
  recA Streptococcus pneumoniae TIGR4

62.848

91.761

0.577
  recA Streptococcus pneumoniae Rx1

62.848

91.761

0.577
  recA Streptococcus pneumoniae D39

62.848

91.761

0.577
  recA Streptococcus pneumoniae R6

62.848

91.761

0.577
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

91.193

0.571
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.037

92.045

0.571
  recA Streptococcus mitis NCTC 12261

62.229

91.761

0.571
  recA Streptococcus mitis SK321

62.229

91.761

0.571
  recA Streptococcus pyogenes NZ131

61.846

92.33

0.571
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.36

94.602

0.571
  recA Lactococcus lactis subsp. cremoris KW2

61.92

91.761

0.568
  recA Streptococcus mutans UA159

61.538

92.33

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

60.923

92.33

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.059

91.193

0.557

Multiple sequence alignment