Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PFJ30894_RS07940 Genome accession   NZ_AP019004
Coordinates   1613634..1614701 (+) Length   355 a.a.
NCBI ID   WP_125669515.1    Uniprot ID   -
Organism   Phascolarctobacterium faecium strain JCM 30894     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1608634..1619701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFJ30894_RS07915 (PFJ30894_01608) ribD 1609127..1610236 (+) 1110 WP_125669512.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  PFJ30894_RS07920 (PFJ30894_01609) - 1610238..1610897 (+) 660 WP_021718437.1 riboflavin synthase -
  PFJ30894_RS07925 (PFJ30894_01610) - 1610915..1612153 (+) 1239 WP_125669513.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -
  PFJ30894_RS07930 (PFJ30894_01611) ribE 1612186..1612653 (+) 468 WP_367883006.1 6,7-dimethyl-8-ribityllumazine synthase -
  PFJ30894_RS07935 (PFJ30894_01612) hslO 1612697..1613551 (+) 855 WP_021718440.1 Hsp33 family molecular chaperone HslO -
  PFJ30894_RS07940 (PFJ30894_01613) recA 1613634..1614701 (+) 1068 WP_125669515.1 recombinase RecA Machinery gene
  PFJ30894_RS07945 (PFJ30894_01614) - 1614667..1615182 (+) 516 WP_125669516.1 regulatory protein RecX -
  PFJ30894_RS07950 (PFJ30894_01615) rny 1615308..1616852 (+) 1545 WP_021718443.1 ribonuclease Y -
  PFJ30894_RS07955 (PFJ30894_01616) - 1617004..1617405 (+) 402 WP_021718444.1 zinc ribbon domain-containing protein -
  PFJ30894_RS07960 (PFJ30894_01617) rpmB 1617456..1617647 (-) 192 WP_021718445.1 50S ribosomal protein L28 -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38491.15 Da        Isoelectric Point: 5.2149

>NTDB_id=72025 PFJ30894_RS07940 WP_125669515.1 1613634..1614701(+) (recA) [Phascolarctobacterium faecium strain JCM 30894]
MSTEKLNAEKTKALENAMRQIEKDFGKGSIMKLGEASAKMNIEVIPTGALSLDIALGVGGIPRGRVIEIYGPESSGKTTV
ALHMIAETQKIGGYAAFIDAEHALDPEYARKLGVDVDNLLISQPDNGEQALEIADALVRSGAIDIIVIDSVAALVPRAEI
EGEMGDSHVGLQARLMSQALRKLTGIISKSKCATVFINQIREKVGVMFGNPETTTGGRALKFYSTVRMDVRRIETLKNGN
DMIGNRTRVKIVKNKIAPPFKQAEFDIMYGEGISHEGCIVDLGAEFDIINKSGAWYSYGEVRLGQGKEKVKDFLKENPEM
ATEIEAKIREHTIAKLVSAESGVSDAEPVVQELSD

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=72025 PFJ30894_RS07940 WP_125669515.1 1613634..1614701(+) (recA) [Phascolarctobacterium faecium strain JCM 30894]
ATGAGTACGGAAAAACTGAACGCTGAAAAAACAAAAGCGTTGGAAAATGCAATGCGCCAAATCGAAAAAGATTTCGGTAA
AGGTTCGATCATGAAATTGGGCGAAGCCAGCGCTAAAATGAACATAGAGGTTATTCCTACAGGCGCTTTGTCTTTAGATA
TAGCTTTGGGAGTAGGCGGCATTCCACGCGGCAGGGTCATCGAGATCTATGGCCCGGAATCTTCCGGTAAAACTACAGTT
GCCCTGCATATGATCGCTGAAACACAGAAAATCGGTGGTTATGCGGCGTTTATCGACGCTGAGCATGCTTTGGACCCTGA
ATACGCACGTAAGCTGGGCGTCGATGTCGACAATCTGCTGATTTCGCAGCCTGATAACGGCGAGCAGGCATTGGAGATCG
CTGATGCTTTAGTACGCAGCGGCGCTATCGATATCATCGTTATCGACTCCGTAGCGGCTTTGGTACCGCGTGCAGAGATC
GAAGGCGAGATGGGTGATTCTCACGTTGGCCTGCAGGCCAGGTTGATGAGTCAGGCTCTGCGTAAGCTGACCGGTATCAT
TTCCAAGTCTAAATGTGCTACTGTTTTCATCAATCAGATCCGCGAAAAAGTCGGAGTTATGTTCGGAAATCCAGAAACAA
CTACCGGCGGCAGAGCGTTGAAATTTTATTCCACTGTCCGCATGGATGTACGACGGATTGAAACTCTGAAAAACGGCAAC
GATATGATAGGCAACCGTACCCGCGTGAAAATCGTTAAAAATAAAATCGCTCCGCCTTTCAAACAGGCAGAATTTGATAT
TATGTACGGTGAAGGCATTTCCCATGAAGGCTGCATCGTAGATCTGGGTGCAGAGTTTGACATCATCAATAAAAGCGGTG
CATGGTATTCCTACGGCGAGGTTCGTTTGGGACAGGGCAAAGAAAAGGTCAAAGATTTTCTCAAAGAAAATCCGGAAATG
GCTACTGAGATCGAAGCCAAGATCCGCGAGCATACTATTGCCAAATTAGTAAGCGCAGAAAGCGGTGTAAGCGATGCTGA
ACCGGTCGTCCAAGAACTTAGCGACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

71.296

91.268

0.651
  recA Ralstonia pseudosolanacearum GMI1000

67.485

91.831

0.62
  recA Latilactobacillus sakei subsp. sakei 23K

68.224

90.423

0.617
  recA Neisseria gonorrhoeae MS11

67.284

91.268

0.614
  recA Neisseria gonorrhoeae MS11

67.284

91.268

0.614
  recA Neisseria gonorrhoeae strain FA1090

67.284

91.268

0.614
  recA Glaesserella parasuis strain SC1401

61.254

98.873

0.606
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.314

95.211

0.603
  recA Acinetobacter baumannii D1279779

61.988

96.338

0.597
  recA Acinetobacter baylyi ADP1

63.939

92.958

0.594
  recA Pseudomonas stutzeri DSM 10701

60

98.592

0.592
  recA Vibrio cholerae strain A1552

60.756

96.901

0.589
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.756

96.901

0.589
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

65.109

90.423

0.589
  recA Streptococcus mitis NCTC 12261

61.934

93.239

0.577
  recA Streptococcus pneumoniae Rx1

61.934

93.239

0.577
  recA Streptococcus pneumoniae D39

61.934

93.239

0.577
  recA Streptococcus pneumoniae R6

61.934

93.239

0.577
  recA Streptococcus pneumoniae TIGR4

61.934

93.239

0.577
  recA Streptococcus mitis SK321

61.934

93.239

0.577
  recA Lactococcus lactis subsp. cremoris KW2

61.631

93.239

0.575
  recA Streptococcus pyogenes NZ131

61.329

93.239

0.572
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.154

91.549

0.569
  recA Streptococcus mutans UA159

61.027

93.239

0.569
  recA Helicobacter pylori strain NCTC11637

61.35

91.831

0.563
  recA Helicobacter pylori 26695

61.35

91.831

0.563

Multiple sequence alignment