Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | NVB75_RS13640 | Genome accession | NZ_CP102929 |
| Coordinates | 3006338..3007396 (-) | Length | 352 a.a. |
| NCBI ID | WP_003208645.1 | Uniprot ID | A0A2N7Y6F3 |
| Organism | Pseudomonas sp. CBS | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 3006338..3032308 | 3006338..3007396 | within | 0 |
Gene organization within MGE regions
Location: 3006338..3032308
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NVB75_RS13640 (NVB75_13640) | recA | 3006338..3007396 (-) | 1059 | WP_003208645.1 | recombinase RecA | Machinery gene |
| NVB75_RS13645 (NVB75_13645) | - | 3007480..3007980 (-) | 501 | WP_063033904.1 | CinA family protein | - |
| NVB75_RS13650 (NVB75_13650) | - | 3008052..3008564 (-) | 513 | WP_258347582.1 | lysis protein | - |
| NVB75_RS13655 (NVB75_13655) | - | 3008552..3009109 (-) | 558 | WP_258347583.1 | glycoside hydrolase family 19 protein | - |
| NVB75_RS13660 (NVB75_13660) | - | 3009138..3009575 (-) | 438 | WP_258347585.1 | phage tail assembly chaperone | - |
| NVB75_RS13665 (NVB75_13665) | - | 3009575..3010696 (-) | 1122 | WP_258347587.1 | hypothetical protein | - |
| NVB75_RS13670 (NVB75_13670) | - | 3010708..3011307 (-) | 600 | WP_258347589.1 | YmfQ family protein | - |
| NVB75_RS13675 (NVB75_13675) | - | 3011295..3012335 (-) | 1041 | WP_258347590.1 | baseplate J/gp47 family protein | - |
| NVB75_RS13680 (NVB75_13680) | - | 3012325..3012723 (-) | 399 | WP_258347592.1 | phage GP46 family protein | - |
| NVB75_RS13685 (NVB75_13685) | - | 3012723..3013232 (-) | 510 | WP_017480159.1 | phage baseplate assembly protein V | - |
| NVB75_RS13690 (NVB75_13690) | - | 3013249..3014286 (-) | 1038 | WP_258347595.1 | phage baseplate assembly protein | - |
| NVB75_RS13695 (NVB75_13695) | - | 3014290..3015528 (-) | 1239 | WP_258347597.1 | DNA circularization protein | - |
| NVB75_RS13700 (NVB75_13700) | - | 3015515..3017131 (-) | 1617 | WP_258347599.1 | hypothetical protein | - |
| NVB75_RS13705 (NVB75_13705) | - | 3017131..3017256 (-) | 126 | WP_010170085.1 | hypothetical protein | - |
| NVB75_RS13710 (NVB75_13710) | - | 3017262..3017558 (-) | 297 | WP_017480155.1 | phage tail assembly protein | - |
| NVB75_RS13715 (NVB75_13715) | - | 3017555..3017902 (-) | 348 | WP_010170089.1 | phage tail tube protein | - |
| NVB75_RS13720 (NVB75_13720) | - | 3017967..3019463 (-) | 1497 | WP_258347604.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| NVB75_RS13725 (NVB75_13725) | - | 3019463..3019645 (-) | 183 | WP_010170093.1 | DUF2635 domain-containing protein | - |
| NVB75_RS13730 (NVB75_13730) | - | 3019642..3020226 (-) | 585 | WP_258347606.1 | hypothetical protein | - |
| NVB75_RS13735 (NVB75_13735) | - | 3020286..3021296 (-) | 1011 | WP_258347608.1 | contractile injection system protein, VgrG/Pvc8 family | - |
| NVB75_RS13740 (NVB75_13740) | - | 3021306..3021518 (-) | 213 | WP_017480150.1 | tail protein X | - |
| NVB75_RS13745 (NVB75_13745) | - | 3021511..3021894 (-) | 384 | WP_017480149.1 | phage tail protein | - |
| NVB75_RS13750 (NVB75_13750) | - | 3021894..3023321 (-) | 1428 | WP_258347611.1 | tail tape measure protein | - |
| NVB75_RS13755 (NVB75_13755) | - | 3023450..3024031 (-) | 582 | WP_258347613.1 | phage tail assembly protein | - |
| NVB75_RS13760 (NVB75_13760) | - | 3024083..3024589 (-) | 507 | WP_258347615.1 | phage major tail tube protein | - |
| NVB75_RS13765 (NVB75_13765) | - | 3024589..3025755 (-) | 1167 | WP_010170109.1 | tail protein | - |
| NVB75_RS13770 (NVB75_13770) | - | 3025758..3025931 (-) | 174 | WP_003208665.1 | hypothetical protein | - |
| NVB75_RS13775 (NVB75_13775) | - | 3026021..3026281 (-) | 261 | WP_258347617.1 | tail fiber assembly protein | - |
| NVB75_RS13780 (NVB75_13780) | - | 3026281..3026898 (-) | 618 | WP_258347619.1 | hypothetical protein | - |
| NVB75_RS13785 (NVB75_13785) | - | 3026979..3027521 (-) | 543 | WP_258347621.1 | hypothetical protein | - |
| NVB75_RS13790 (NVB75_13790) | - | 3027518..3028156 (-) | 639 | WP_258347622.1 | phage tail protein I | - |
| NVB75_RS13795 (NVB75_13795) | - | 3028153..3029148 (-) | 996 | WP_258347624.1 | baseplate J/gp47 family protein | - |
| NVB75_RS13800 (NVB75_13800) | - | 3029145..3029477 (-) | 333 | WP_010170122.1 | phage baseplate protein | - |
| NVB75_RS13805 (NVB75_13805) | - | 3029490..3030098 (-) | 609 | WP_258347626.1 | phage baseplate assembly protein V | - |
| NVB75_RS13810 (NVB75_13810) | - | 3030102..3030617 (-) | 516 | WP_258347628.1 | hypothetical protein | - |
| NVB75_RS13815 (NVB75_13815) | - | 3030640..3030978 (-) | 339 | WP_017480135.1 | phage holin family protein | - |
| NVB75_RS13820 (NVB75_13820) | - | 3031574..3032308 (-) | 735 | WP_258347630.1 | XRE family transcriptional regulator | - |
Sequence
Protein
Download Length: 352 a.a. Molecular weight: 37620.18 Da Isoelectric Point: 5.3036
>NTDB_id=719789 NVB75_RS13640 WP_003208645.1 3006338..3007396(-) (recA) [Pseudomonas sp. CBS]
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGSKIGQGKANSAKFLADNPDVAATLEK
QIRDKLLTPAPDVKAAANREPVEEVEEVDTDI
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGSKIGQGKANSAKFLADNPDVAATLEK
QIRDKLLTPAPDVKAAANREPVEEVEEVDTDI
Nucleotide
Download Length: 1059 bp
>NTDB_id=719789 NVB75_RS13640 WP_003208645.1 3006338..3007396(-) (recA) [Pseudomonas sp. CBS]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCACGACCGTCAGGCGATCCCGGCTATCTCTACTGGCTCTCTGGGTCTGGATATCGCGCTCGGCATTGGCG
GCCTGCCAAAAGGCCGTATCGTTGAAATCTACGGTCCTGAATCTTCCGGTAAAACCACCCTGACCCTGTCGGTGATTGCC
CAGGCACAAAAGATGGGCGCCACTTGTGCGTTCGTCGATGCCGAGCACGCCCTGGATCCAGAATACGCCGGCAAGCTGGG
CGTCAACGTTGACGACCTGCTGGTTTCGCAACCGGACACCGGTGAGCAAGCGCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCATCGACGTGATCGTGGTCGACTCCGTGGCAGCCCTGGTACCGAAGGCTGAGATCGAAGGCGAAATGGGCGAC
ATGCACGTGGGCCTGCAAGCCCGCCTGATGTCCCAGGCCCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGGATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTCCGTCTGGACATCCGCCGTACTGGCGCGGTGAAGGAAGGTGACGAGGTTGTCGGTAGCGAA
ACCCGCGTCAAAGTCGTGAAGAACAAGGTGGCTCCGCCGTTCCGTCAGGCTGAGTTCCAGATTCTCTACGGCAAGGGTAT
CTACCTGAACGGCGAGATGATCGACCTGGGCGTGCTGCACGGTTTCGTCGAGAAGTCCGGTGCCTGGTATGCCTACAACG
GCAGCAAGATCGGCCAGGGCAAGGCCAACTCGGCCAAGTTCCTTGCGGATAACCCGGATGTTGCCGCTACGCTCGAGAAG
CAGATCCGCGACAAGCTGTTGACCCCGGCACCTGACGTCAAGGCCGCCGCCAACCGCGAGCCGGTTGAAGAAGTAGAAGA
AGTCGACACTGACATCTGA
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCACGACCGTCAGGCGATCCCGGCTATCTCTACTGGCTCTCTGGGTCTGGATATCGCGCTCGGCATTGGCG
GCCTGCCAAAAGGCCGTATCGTTGAAATCTACGGTCCTGAATCTTCCGGTAAAACCACCCTGACCCTGTCGGTGATTGCC
CAGGCACAAAAGATGGGCGCCACTTGTGCGTTCGTCGATGCCGAGCACGCCCTGGATCCAGAATACGCCGGCAAGCTGGG
CGTCAACGTTGACGACCTGCTGGTTTCGCAACCGGACACCGGTGAGCAAGCGCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCATCGACGTGATCGTGGTCGACTCCGTGGCAGCCCTGGTACCGAAGGCTGAGATCGAAGGCGAAATGGGCGAC
ATGCACGTGGGCCTGCAAGCCCGCCTGATGTCCCAGGCCCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGGATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTCCGTCTGGACATCCGCCGTACTGGCGCGGTGAAGGAAGGTGACGAGGTTGTCGGTAGCGAA
ACCCGCGTCAAAGTCGTGAAGAACAAGGTGGCTCCGCCGTTCCGTCAGGCTGAGTTCCAGATTCTCTACGGCAAGGGTAT
CTACCTGAACGGCGAGATGATCGACCTGGGCGTGCTGCACGGTTTCGTCGAGAAGTCCGGTGCCTGGTATGCCTACAACG
GCAGCAAGATCGGCCAGGGCAAGGCCAACTCGGCCAAGTTCCTTGCGGATAACCCGGATGTTGCCGCTACGCTCGAGAAG
CAGATCCGCGACAAGCTGTTGACCCCGGCACCTGACGTCAAGGCCGCCGCCAACCGCGAGCCGGTTGAAGAAGTAGAAGA
AGTCGACACTGACATCTGA
Similar proteins
Only experimentally validated proteins are listed.