Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NVV93_RS13725 Genome accession   NZ_CP102830
Coordinates   3069681..3070727 (-) Length   348 a.a.
NCBI ID   WP_258251195.1    Uniprot ID   -
Organism   Pseudomonas sp. LS44     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3064681..3075727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NVV93_RS13695 (NVV93_13695) erdR 3064781..3065431 (-) 651 WP_258251189.1 response regulator transcription factor ErdR -
  NVV93_RS13700 (NVV93_13700) - 3065553..3066440 (+) 888 WP_258251190.1 DMT family transporter -
  NVV93_RS13705 (NVV93_13705) - 3066447..3067193 (-) 747 WP_258251191.1 tRNA-uridine aminocarboxypropyltransferase -
  NVV93_RS13710 (NVV93_13710) - 3067376..3067780 (+) 405 WP_258251192.1 quorum-sensing-regulated virulence factor family protein -
  NVV93_RS13715 (NVV93_13715) - 3068030..3069100 (+) 1071 WP_258251193.1 LOG family protein -
  NVV93_RS13720 (NVV93_13720) recX 3069207..3069671 (-) 465 WP_258251194.1 recombination regulator RecX -
  NVV93_RS13725 (NVV93_13725) recA 3069681..3070727 (-) 1047 WP_258251195.1 recombinase RecA Machinery gene
  NVV93_RS13730 (NVV93_13730) - 3070814..3071320 (-) 507 WP_258251196.1 CinA family protein -
  NVV93_RS13735 (NVV93_13735) mutS 3071395..3073962 (+) 2568 WP_258251197.1 DNA mismatch repair protein MutS -
  NVV93_RS13740 (NVV93_13740) fdxA 3074109..3074432 (+) 324 WP_258251198.1 ferredoxin FdxA -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 36919.26 Da        Isoelectric Point: 5.2965

>NTDB_id=719150 NVV93_RS13725 WP_258251195.1 3069681..3070727(-) (recA) [Pseudomonas sp. LS44]
MDENKKRALAAALGQIEKQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKLGATCAFVDAEHALDPDYAAKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVVIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKDGDEVTGSE
TRVKVVKNKVAPPFRQAEFQIMYGKGIYRTGEIIDLGVQLGLVEKSGAWYSYQGGKIGQGKANAAKYMEDNPEVGATVER
QIREKLLSNAPAAAASASTADDLADIDA

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=719150 NVV93_RS13725 WP_258251195.1 3069681..3070727(-) (recA) [Pseudomonas sp. LS44]
ATGGACGAGAATAAGAAGCGCGCTTTGGCTGCAGCCCTGGGCCAGATCGAAAAACAATTCGGCAAAGGCGCAGTCATGCG
CATGGGCGATCATGAGCGCCAAGCCATTCCGGCTATCTCTACCGGCTCGCTCGGCTTGGATATCGCCCTGGGTATCGGCG
GTTTGCCAAAAGGCCGGATCGTGGAGATCTATGGCCCGGAATCATCGGGCAAAACCACCTTGACCCTGTCGGTCATTGCT
GAGGCGCAGAAGCTGGGTGCTACTTGCGCCTTCGTCGATGCCGAGCATGCGCTGGACCCGGACTATGCGGCCAAACTGGG
CGTCAACGTTGACGACCTGCTGGTATCGCAGCCAGACACGGGCGAACAGGCCTTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCTGTCGACGTCGTCATCGTCGACTCGGTTGCCGCGCTGGTGCCGAAAGCTGAAATCGAAGGTGAAATGGGCGAC
ATGCACGTGGGCTTGCAAGCTCGCTTGATGAGCCAGGCACTGCGCAAAATCACCGGTAACATCAAGAATGCCAACTGCCT
GGTGATTTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCTGAAACCACCACCGGCGGCAATGCGT
TGAAGTTCTACGCCTCGGTACGTCTGGACATTCGCCGTACTGGTGCAGTGAAGGACGGCGATGAGGTCACCGGCAGCGAA
ACCCGCGTCAAAGTGGTGAAAAACAAAGTCGCACCACCTTTCCGGCAGGCCGAATTCCAGATCATGTACGGCAAAGGTAT
CTATCGCACCGGCGAGATCATCGACCTGGGCGTACAGCTCGGTCTGGTGGAGAAATCTGGCGCCTGGTACAGCTACCAAG
GCGGCAAGATCGGTCAAGGCAAGGCCAACGCAGCCAAGTACATGGAAGACAATCCGGAAGTGGGTGCCACTGTCGAGCGG
CAGATTCGCGAGAAGCTGCTGAGCAATGCGCCGGCTGCCGCGGCTAGCGCCAGCACGGCCGACGATCTGGCCGACATCGA
CGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

89.049

99.713

0.888
  recA Vibrio cholerae strain A1552

72.464

99.138

0.718
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.464

99.138

0.718
  recA Acinetobacter baylyi ADP1

72.254

99.425

0.718
  recA Acinetobacter baumannii D1279779

73.952

95.977

0.71
  recA Glaesserella parasuis strain SC1401

71.098

99.425

0.707
  recA Neisseria gonorrhoeae MS11

70.679

93.103

0.658
  recA Neisseria gonorrhoeae MS11

70.679

93.103

0.658
  recA Neisseria gonorrhoeae strain FA1090

70.679

93.103

0.658
  recA Ralstonia pseudosolanacearum GMI1000

73.633

89.368

0.658
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.772

95.977

0.612
  recA Helicobacter pylori strain NCTC11637

63.939

94.828

0.606
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.22

93.966

0.603
  recA Helicobacter pylori 26695

63.333

94.828

0.601
  recA Streptococcus pyogenes NZ131

57.465

100

0.586
  recA Bacillus subtilis subsp. subtilis str. 168

63.24

92.241

0.583
  recA Streptococcus mitis SK321

58.166

100

0.583
  recA Streptococcus mutans UA159

60.308

93.391

0.563
  recA Latilactobacillus sakei subsp. sakei 23K

60.748

92.241

0.56
  recA Streptococcus mitis NCTC 12261

60.062

92.816

0.557
  recA Streptococcus pneumoniae Rx1

59.509

93.678

0.557
  recA Streptococcus pneumoniae D39

59.509

93.678

0.557
  recA Streptococcus pneumoniae R6

59.509

93.678

0.557
  recA Streptococcus pneumoniae TIGR4

59.509

93.678

0.557
  recA Lactococcus lactis subsp. cremoris KW2

57.895

92.816

0.537
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.657

93.966

0.523