Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NTU39_RS23100 Genome accession   NZ_CP102780
Coordinates   5130454..5131518 (-) Length   354 a.a.
NCBI ID   WP_039393076.1    Uniprot ID   A0A5E4Z7A1
Organism   Pandoraea commovens strain LB-19-202-79     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5125454..5136518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NTU39_RS23075 (NTU39_23075) - 5125793..5126521 (-) 729 WP_150666625.1 TerC family protein -
  NTU39_RS23080 (NTU39_23080) sucD 5126684..5127565 (-) 882 WP_039393073.1 succinate--CoA ligase subunit alpha -
  NTU39_RS23085 (NTU39_23085) sucC 5127651..5128817 (-) 1167 WP_150666626.1 ADP-forming succinate--CoA ligase subunit beta -
  NTU39_RS23090 (NTU39_23090) - 5128814..5129494 (-) 681 WP_150666627.1 DUF2889 domain-containing protein -
  NTU39_RS23095 (NTU39_23095) recX 5129804..5130349 (-) 546 WP_150666628.1 recombination regulator RecX -
  NTU39_RS23100 (NTU39_23100) recA 5130454..5131518 (-) 1065 WP_039393076.1 recombinase RecA Machinery gene
  NTU39_RS23105 (NTU39_23105) - 5131721..5132410 (+) 690 WP_039393077.1 response regulator transcription factor -
  NTU39_RS23110 (NTU39_23110) - 5132424..5134037 (+) 1614 WP_150666629.1 sensor histidine kinase -
  NTU39_RS23115 (NTU39_23115) - 5134209..5135867 (+) 1659 WP_150666630.1 MFS transporter -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37797.13 Da        Isoelectric Point: 4.7721

>NTDB_id=718998 NTU39_RS23100 WP_039393076.1 5130454..5131518(-) (recA) [Pandoraea commovens strain LB-19-202-79]
MEESKKGSANLSAEKGKALAAALAQIEKQFGKGSIMRLGDGEVEADIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESS
GKTTLTLQVVAEMQKIGGTCAFIDAEHALDVGYANKLGVSVPELLISQPDTGEQALEIADALVRSGSIDLIIIDSVAALV
PKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCTVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGS
IKKGDEVVGNETRVKVVKNKVSPPFREAIFDILYGQGISREGEIIDLGVNAKIVEKAGAWYSYNGEKIGQGKDNAREFLR
ENPEIAHEIENKVRASLGVTAINETGEIEEDDEA

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=718998 NTU39_RS23100 WP_039393076.1 5130454..5131518(-) (recA) [Pandoraea commovens strain LB-19-202-79]
ATGGAAGAAAGCAAGAAAGGGTCTGCCAATCTGTCGGCCGAGAAAGGCAAGGCGCTCGCCGCCGCCCTCGCGCAGATCGA
GAAGCAATTCGGCAAGGGCTCGATCATGCGTCTTGGCGACGGCGAGGTCGAAGCGGACATCCAGGTCGTCTCCACGGGCT
CGCTGGGTCTGGACATCGCACTGGGCGTCGGTGGCCTGCCGCGCGGTCGTGTGATCGAAATCTACGGCCCGGAATCGTCG
GGTAAGACCACGCTCACGTTGCAAGTCGTGGCGGAAATGCAGAAGATCGGTGGCACCTGCGCGTTTATCGACGCAGAACA
CGCCCTCGATGTCGGTTACGCCAACAAGCTGGGCGTCTCGGTGCCGGAACTGCTGATCTCGCAGCCGGACACGGGCGAGC
AGGCGCTGGAAATCGCCGATGCGCTGGTGCGCTCGGGCTCGATCGACCTCATCATCATCGACTCGGTTGCGGCACTCGTG
CCGAAGGCCGAAATCGAAGGCGAGATGGGCGATTCGCTGCCGGGTCTTCAGGCACGTCTGATGTCGCAGGCGCTGCGTAA
GCTGACCGGCACGATCAAGCGCACGAACTGCACGGTGATCTTCATCAACCAGATTCGTATGAAGATCGGCGTCATGTTCG
GTAACCCGGAAACGACGACGGGCGGTAACGCACTGAAGTTCTACTCGTCGGTGCGTCTGGACATCCGCCGTATCGGTTCG
ATCAAGAAGGGCGACGAGGTGGTCGGTAACGAAACCCGCGTCAAGGTCGTCAAGAACAAGGTGTCGCCGCCGTTCCGCGA
AGCGATTTTCGACATCCTCTACGGTCAGGGTATCTCGCGCGAAGGCGAAATCATCGATCTGGGCGTCAACGCGAAGATCG
TCGAGAAGGCCGGCGCCTGGTACAGCTACAACGGCGAGAAGATCGGTCAGGGCAAGGACAACGCGCGTGAATTCCTGCGC
GAAAATCCGGAAATCGCCCACGAGATCGAGAACAAGGTACGTGCATCGCTGGGTGTGACGGCGATCAATGAAACCGGCGA
GATCGAAGAAGACGACGAGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(17-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5E4Z7A1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

85.876

100

0.859
  recA Neisseria gonorrhoeae MS11

72.965

97.175

0.709
  recA Neisseria gonorrhoeae strain FA1090

72.965

97.175

0.709
  recA Neisseria gonorrhoeae MS11

72.965

97.175

0.709
  recA Pseudomonas stutzeri DSM 10701

73.574

94.068

0.692
  recA Acinetobacter baumannii D1279779

70.845

96.893

0.686
  recA Acinetobacter baylyi ADP1

71.386

95.763

0.684
  recA Glaesserella parasuis strain SC1401

69.477

97.175

0.675
  recA Vibrio cholerae strain A1552

72.477

92.373

0.669
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.477

92.373

0.669
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.791

97.175

0.61
  recA Bacillus subtilis subsp. subtilis str. 168

64.832

92.373

0.599
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.134

92.938

0.596
  recA Helicobacter pylori 26695

64.134

92.938

0.596
  recA Helicobacter pylori strain NCTC11637

63.83

92.938

0.593
  recA Streptococcus mitis NCTC 12261

59.829

99.153

0.593
  recA Streptococcus pneumoniae D39

60.756

97.175

0.59
  recA Streptococcus pneumoniae Rx1

60.756

97.175

0.59
  recA Streptococcus pneumoniae R6

60.756

97.175

0.59
  recA Streptococcus pneumoniae TIGR4

60.756

97.175

0.59
  recA Streptococcus mitis SK321

59.544

99.153

0.59
  recA Streptococcus mutans UA159

60.174

97.175

0.585
  recA Latilactobacillus sakei subsp. sakei 23K

62.236

93.503

0.582
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60

96.045

0.576
  recA Lactococcus lactis subsp. cremoris KW2

60.121

93.503

0.562
  recA Streptococcus pyogenes NZ131

60.486

92.938

0.562