Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NVS55_RS07415 Genome accession   NZ_CP102770
Coordinates   1812293..1813321 (-) Length   342 a.a.
NCBI ID   WP_342379264.1    Uniprot ID   -
Organism   Myxococcus stipitatus strain YRE12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1807293..1818321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NVS55_RS07395 (NVS55_07410) pssA 1808001..1808858 (+) 858 WP_342379260.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  NVS55_RS07400 (NVS55_07415) - 1809020..1810282 (+) 1263 WP_342379261.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  NVS55_RS07405 (NVS55_07420) - 1810279..1811724 (+) 1446 WP_342379262.1 hypothetical protein -
  NVS55_RS07410 (NVS55_07425) - 1811783..1812292 (+) 510 WP_342379263.1 DUF1285 domain-containing protein -
  NVS55_RS07415 (NVS55_07430) recA 1812293..1813321 (-) 1029 WP_342379264.1 recombinase RecA Machinery gene
  NVS55_RS07420 (NVS55_07435) - 1813915..1815273 (+) 1359 WP_342379265.1 NAD(P)/FAD-dependent oxidoreductase -
  NVS55_RS07425 (NVS55_07440) - 1815201..1816916 (-) 1716 WP_342379267.1 YifB family Mg chelatase-like AAA ATPase -
  NVS55_RS07430 (NVS55_07445) - 1817191..1817781 (+) 591 WP_342379269.1 hypothetical protein -
  NVS55_RS07435 (NVS55_07450) - 1817682..1818305 (-) 624 WP_342379270.1 DUF2378 family protein -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 36102.43 Da        Isoelectric Point: 7.4366

>NTDB_id=718964 NVS55_RS07415 WP_342379264.1 1812293..1813321(-) (recA) [Myxococcus stipitatus strain YRE12]
MSKLTEKLKAVAAAVASIEKQFGKGSVMTLGGDTREQKVAVIPSGSVGLDRALGVGGYPRGRVVEVFGNESSGKTTLTLH
AIAQVQAAGGVAAFIDAEHALDLSYARKLGVRVEELLVSQPDTGEQALEITEQLVRSGAVDLIIVDSVAALVPRAEIEGE
MGDAHMGVQARLMSQALRKLTGAVSRSGTCIVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLEIRRTGNIKEGDSVV
GSRARVKVVKNKVAPPFQEAEFDLLYGSGVHRAGEVLDLGVAAGLIDKSGSHFSLRGERIGQGRERAIEWLREHPDTMEA
LARELAGAPPLPCPAAPMEAAA

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=718964 NVS55_RS07415 WP_342379264.1 1812293..1813321(-) (recA) [Myxococcus stipitatus strain YRE12]
ATGAGCAAGTTGACGGAGAAGCTGAAGGCAGTCGCGGCGGCGGTGGCATCCATCGAGAAGCAGTTCGGGAAGGGCTCGGT
GATGACGCTGGGAGGAGACACCCGCGAGCAGAAGGTCGCGGTGATTCCCTCGGGCTCGGTGGGACTGGACCGGGCGCTTG
GCGTGGGTGGCTACCCTCGCGGTCGCGTGGTGGAGGTGTTCGGCAATGAGTCGTCAGGCAAGACGACCCTCACGCTGCAT
GCGATTGCGCAGGTGCAGGCCGCCGGTGGGGTGGCGGCCTTCATCGACGCGGAGCACGCGCTCGACCTGTCCTATGCGCG
CAAGCTCGGCGTGAGGGTGGAGGAACTCCTGGTGTCCCAGCCAGATACGGGAGAACAGGCCCTGGAAATCACGGAGCAGC
TCGTTCGCTCCGGAGCCGTGGACCTCATCATCGTGGACTCGGTGGCGGCGCTGGTGCCTCGCGCGGAAATCGAGGGCGAG
ATGGGGGACGCACACATGGGCGTGCAGGCCCGACTGATGAGCCAGGCCCTGCGCAAGCTCACCGGCGCCGTGAGTCGCTC
GGGCACCTGCATCGTCTTCATCAATCAGATTCGAATGAAGATTGGCGTGATGTTCGGCAACCCGGAGACGACGACCGGCG
GCAACGCACTGAAGTTCTACTCCTCCGTGCGCCTGGAGATTCGTCGAACGGGAAACATCAAGGAGGGCGACAGCGTGGTG
GGCTCTCGAGCCCGCGTGAAGGTGGTGAAGAACAAGGTCGCCCCTCCGTTCCAGGAAGCCGAGTTCGACCTGCTGTACGG
CTCCGGAGTCCATCGCGCGGGCGAGGTACTCGACCTGGGCGTGGCCGCGGGGCTCATCGACAAGTCAGGGAGCCACTTCA
GCCTGCGCGGCGAACGCATCGGACAGGGACGTGAGCGCGCCATCGAGTGGCTGCGCGAGCACCCCGATACCATGGAGGCG
CTGGCTCGGGAGCTGGCGGGTGCGCCTCCCCTTCCCTGCCCCGCCGCGCCCATGGAAGCCGCGGCCTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

67.192

92.69

0.623
  recA Neisseria gonorrhoeae strain FA1090

65.231

95.029

0.62
  recA Neisseria gonorrhoeae MS11

65.231

95.029

0.62
  recA Neisseria gonorrhoeae MS11

65.231

95.029

0.62
  recA Pseudomonas stutzeri DSM 10701

65.312

93.567

0.611
  recA Acinetobacter baylyi ADP1

64.486

93.86

0.605
  recA Vibrio cholerae strain A1552

64.263

93.275

0.599
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.263

93.275

0.599
  recA Glaesserella parasuis strain SC1401

63.75

93.567

0.596
  recA Bacillus subtilis subsp. subtilis str. 168

64.127

92.105

0.591
  recA Acinetobacter baumannii D1279779

63.009

93.275

0.588
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.059

93.86

0.573
  recA Latilactobacillus sakei subsp. sakei 23K

62.701

90.936

0.57
  recA Helicobacter pylori strain NCTC11637

55.814

100

0.561
  recA Helicobacter pylori 26695

55.814

100

0.561
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.748

92.982

0.556
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.438

93.567

0.547
  recA Lactococcus lactis subsp. cremoris KW2

56.061

96.491

0.541
  recA Streptococcus pyogenes NZ131

57.099

94.737

0.541
  recA Streptococcus mutans UA159

57.5

93.567

0.538
  recA Streptococcus pneumoniae D39

56.173

94.737

0.532
  recA Streptococcus pneumoniae R6

56.173

94.737

0.532
  recA Streptococcus pneumoniae Rx1

56.173

94.737

0.532
  recA Streptococcus pneumoniae TIGR4

56.173

94.737

0.532
  recA Streptococcus mitis SK321

57.098

92.69

0.529
  recA Streptococcus mitis NCTC 12261

55.864

94.737

0.529