Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NVS55_RS07140 Genome accession   NZ_CP102770
Coordinates   1739695..1740783 (+) Length   362 a.a.
NCBI ID   WP_342379191.1    Uniprot ID   -
Organism   Myxococcus stipitatus strain YRE12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1734695..1745783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NVS55_RS07125 (NVS55_07140) glmU 1735341..1736738 (+) 1398 WP_342379188.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  NVS55_RS07130 (NVS55_07145) glmS 1736849..1738684 (+) 1836 WP_342379189.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  NVS55_RS07135 - 1738808..1739581 (+) 774 WP_342379190.1 hypothetical protein -
  NVS55_RS07140 (NVS55_07155) recA 1739695..1740783 (+) 1089 WP_342379191.1 recombinase RecA Machinery gene
  NVS55_RS07145 (NVS55_07160) - 1741027..1743180 (+) 2154 WP_342379192.1 alkaline phosphatase D family protein -
  NVS55_RS07150 (NVS55_07165) - 1743324..1743857 (+) 534 WP_342379193.1 GNAT family protein -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 38920.65 Da        Isoelectric Point: 6.8708

>NTDB_id=718963 NVS55_RS07140 WP_342379191.1 1739695..1740783(+) (recA) [Myxococcus stipitatus strain YRE12]
MAVNQEKEKAIELAMSAVERQFGKGSIMRLGNDEPLMRDVQAISTGSISLDIALGVGGVPKGRIIEIFGPESSGKTTLCL
HIVAEAQKRGGICGYVDAEHALDVGYARKLGVRTDDLLLSQPDTGEQALEIAEMLVRSGAIDVLVVDSVAALVPKAELEG
EMGDAHMGVQARLMSQALRKLTGTIAKSQTCVIFINQIRMKIGVMFGNPETTTGGNALKFYASQRLDIRRIGAIKNGENV
VGSRTRVKVVKNKVAPPFKEVEFDIMYGTGISREGDLIDLASNDNIVEKSGSWFSFNGERIGQGRENAKDYLKEHPEVSR
AIEAQVLEKYGITKGAPVAAPAAEEAPAEGASEKRQRVKAVK

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=718963 NVS55_RS07140 WP_342379191.1 1739695..1740783(+) (recA) [Myxococcus stipitatus strain YRE12]
ATGGCCGTGAATCAAGAGAAGGAAAAGGCGATCGAGCTGGCGATGTCCGCGGTGGAGCGCCAGTTCGGTAAGGGTTCCAT
CATGCGGCTCGGCAACGACGAGCCCCTGATGCGCGACGTGCAGGCCATTTCGACGGGCTCGATTTCCTTGGACATCGCCC
TGGGAGTGGGCGGCGTCCCGAAGGGCCGAATCATCGAGATCTTCGGCCCGGAATCCTCCGGTAAGACGACGCTGTGTCTC
CACATCGTCGCGGAGGCGCAGAAGCGCGGTGGCATCTGCGGCTACGTGGACGCCGAGCACGCGCTGGACGTGGGCTACGC
GCGCAAGCTGGGCGTGCGCACCGACGACCTGCTGCTGAGCCAGCCGGACACCGGTGAGCAGGCGCTCGAAATCGCGGAGA
TGCTCGTGCGCTCCGGCGCCATCGACGTGCTGGTCGTCGACTCCGTGGCCGCGCTCGTTCCCAAGGCGGAGCTCGAGGGC
GAGATGGGCGATGCGCACATGGGCGTGCAGGCGCGCCTCATGAGCCAGGCCTTGCGCAAGCTCACGGGCACCATCGCCAA
GAGCCAGACGTGCGTCATCTTCATCAACCAGATCCGCATGAAGATTGGCGTGATGTTCGGCAACCCGGAGACGACCACGG
GCGGCAACGCGCTGAAGTTCTACGCGTCCCAGCGCCTGGACATCCGCCGCATCGGCGCCATCAAGAACGGCGAGAACGTG
GTGGGCAGCCGCACGCGCGTGAAGGTGGTGAAGAACAAGGTCGCGCCTCCGTTCAAGGAGGTCGAGTTCGACATCATGTA
CGGCACGGGCATCTCGCGTGAGGGTGACCTCATCGACCTGGCCTCCAACGACAACATCGTGGAGAAGAGCGGCAGCTGGT
TCTCCTTCAACGGTGAGCGCATCGGCCAGGGCCGCGAGAACGCGAAGGACTACCTCAAGGAGCACCCGGAGGTGTCGCGC
GCGATTGAAGCCCAGGTGCTGGAGAAGTACGGCATCACCAAGGGCGCGCCCGTCGCGGCCCCCGCCGCGGAAGAGGCTCC
CGCCGAGGGCGCCAGCGAGAAGCGCCAGCGCGTGAAGGCCGTGAAGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

68.389

90.884

0.622
  recA Pseudomonas stutzeri DSM 10701

63.848

94.751

0.605
  recA Acinetobacter baylyi ADP1

62.824

95.856

0.602
  recA Vibrio cholerae strain A1552

66.258

90.055

0.597
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.258

90.055

0.597
  recA Acinetobacter baumannii D1279779

62.029

95.304

0.591
  recA Neisseria gonorrhoeae MS11

65.432

89.503

0.586
  recA Neisseria gonorrhoeae MS11

65.432

89.503

0.586
  recA Neisseria gonorrhoeae strain FA1090

65.432

89.503

0.586
  recA Glaesserella parasuis strain SC1401

62.059

93.923

0.583
  recA Latilactobacillus sakei subsp. sakei 23K

62.059

93.923

0.583
  recA Streptococcus pneumoniae Rx1

59.207

97.514

0.577
  recA Streptococcus pneumoniae TIGR4

59.207

97.514

0.577
  recA Streptococcus pneumoniae R6

59.207

97.514

0.577
  recA Streptococcus pneumoniae D39

59.207

97.514

0.577
  recA Helicobacter pylori strain NCTC11637

62.651

91.713

0.575
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.236

91.436

0.569
  recA Helicobacter pylori 26695

62.048

91.713

0.569
  recA Bacillus subtilis subsp. subtilis str. 168

62.691

90.331

0.566
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.963

89.503

0.564
  recA Streptococcus mitis SK321

59.302

95.028

0.564
  recA Streptococcus mitis NCTC 12261

59.13

95.304

0.564
  recA Streptococcus pyogenes NZ131

60.303

91.16

0.55
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.337

91.713

0.544
  recA Lactococcus lactis subsp. cremoris KW2

57.692

93.37

0.539
  recA Streptococcus mutans UA159

58.61

91.436

0.536