Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NV347_RS16895 Genome accession   NZ_CP102749
Coordinates   3746648..3747721 (-) Length   357 a.a.
NCBI ID   WP_039483907.1    Uniprot ID   A0AAP9LB20
Organism   Pectobacterium parvum strain YT22221     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3741648..3752721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NV347_RS16880 (NV347_16880) csrA 3742833..3743018 (-) 186 WP_005972168.1 carbon storage regulator CsrA -
  NV347_RS16885 (NV347_16885) alaS 3743343..3745970 (-) 2628 WP_039514163.1 alanine--tRNA ligase -
  NV347_RS16890 (NV347_16890) recX 3746108..3746602 (-) 495 WP_039483909.1 recombination regulator RecX -
  NV347_RS16895 (NV347_16895) recA 3746648..3747721 (-) 1074 WP_039483907.1 recombinase RecA Machinery gene
  NV347_RS16900 (NV347_16900) pncC 3747829..3748323 (-) 495 WP_039483905.1 nicotinamide-nucleotide amidase -
  NV347_RS16905 (NV347_16905) - 3748559..3748894 (-) 336 WP_039483904.1 hypothetical protein -
  NV347_RS16910 (NV347_16910) - 3749376..3749864 (+) 489 WP_039483902.1 SRPBCC family protein -
  NV347_RS16915 (NV347_16915) - 3749947..3750621 (+) 675 WP_039483901.1 MarC family NAAT transporter -
  NV347_RS16920 (NV347_16920) - 3750855..3752387 (+) 1533 WP_225969836.1 sensor domain-containing diguanylate cyclase -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38245.76 Da        Isoelectric Point: 5.0755

>NTDB_id=718793 NV347_RS16895 WP_039483907.1 3746648..3747721(-) (recA) [Pectobacterium parvum strain YT22221]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVG
SETRVKVVKNKVAAPFKQAEFQILYGEGINIHGELVDLGVKHKLIEKAGAWYSYNGDKIGQGKANACNFLKENPTIAAEL
DKKLREMLLHKGNELTPAAAGNSRDEDELAGEGNEEF

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=718793 NV347_RS16895 WP_039483907.1 3746648..3747721(-) (recA) [Pectobacterium parvum strain YT22221]
ATGGCTATTGATGAGAACAAACAAAAGGCACTTGCGGCAGCACTGGGCCAAATCGAAAAGCAATTTGGTAAAGGTTCTAT
CATGCGGTTGGGCGAAGATCGCTCAATGGATGTTGAAACCATTTCTACAGGCTCTTTGTCCCTGGATATCGCACTGGGCG
CCGGTGGTTTACCGATGGGGCGTATCGTTGAGATTTATGGCCCAGAATCTTCCGGTAAAACAACGCTGACTTTACAGGTT
ATTGCTGCCGCTCAGCGTGAAGGCAAAACGTGTGCGTTTATCGATGCTGAGCATGCGCTGGACCCGATTTATGCGAAAAA
ACTTGGCGTAGATATCGATAACCTGCTGTGTTCTCAGCCGGATACCGGCGAGCAAGCGTTGGAGATCTGTGATGCGCTCA
CGCGCTCTGGCGCTGTTGACGTTATCATCGTCGACTCCGTTGCGGCATTGACGCCGAAAGCAGAAATTGAAGGTGAAATC
GGCGACTCCCACATGGGGCTGGCTGCACGTATGATGAGCCAGGCTATGCGTAAACTGGCGGGTAATCTGAAGCAAGCGAA
TACGCTGCTGATCTTCATTAACCAGATTCGTATGAAAATCGGTGTGATGTTCGGTAACCCTGAAACCACCACTGGTGGTA
ACGCACTGAAGTTTTACGCCTCCGTTCGTTTGGATATTCGTCGTACTGGCGCTATCAAGGAAGGCGAAGAAGTTGTCGGC
AGCGAAACCCGCGTGAAAGTCGTGAAGAATAAAGTGGCAGCGCCGTTCAAACAGGCTGAATTCCAAATCCTGTACGGAGA
AGGCATCAATATCCACGGTGAGCTGGTTGATCTGGGTGTGAAACACAAGCTGATCGAAAAAGCCGGTGCCTGGTATAGCT
ATAACGGCGACAAGATCGGTCAGGGTAAAGCGAATGCCTGTAATTTCCTGAAAGAGAACCCGACGATTGCTGCGGAACTG
GATAAGAAATTGCGTGAAATGCTGCTGCACAAAGGCAATGAACTGACGCCAGCCGCTGCTGGAAATAGCCGTGACGAAGA
TGAACTCGCTGGTGAAGGTAACGAAGAATTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

82.817

99.44

0.824
  recA Vibrio cholerae O1 biovar El Tor strain E7946

82.817

99.44

0.824
  recA Pseudomonas stutzeri DSM 10701

74.336

94.958

0.706
  recA Acinetobacter baylyi ADP1

70.317

97.199

0.683
  recA Glaesserella parasuis strain SC1401

68.555

98.88

0.678
  recA Acinetobacter baumannii D1279779

72.727

92.437

0.672
  recA Neisseria gonorrhoeae MS11

69.632

91.317

0.636
  recA Neisseria gonorrhoeae MS11

69.632

91.317

0.636
  recA Neisseria gonorrhoeae strain FA1090

69.632

91.317

0.636
  recA Ralstonia pseudosolanacearum GMI1000

70.418

87.115

0.613
  recA Streptococcus pneumoniae Rx1

60

99.44

0.597
  recA Streptococcus pneumoniae R6

60

99.44

0.597
  recA Streptococcus pneumoniae D39

60

99.44

0.597
  recA Streptococcus pneumoniae TIGR4

60

99.44

0.597
  recA Streptococcus mitis SK321

59.718

99.44

0.594
  recA Helicobacter pylori strain NCTC11637

62.691

91.597

0.574
  recA Helicobacter pylori 26695

62.385

91.597

0.571
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.08

91.597

0.569
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.299

93.838

0.566
  recA Streptococcus mitis NCTC 12261

62.539

90.476

0.566
  recA Streptococcus pyogenes NZ131

62.154

91.036

0.566
  recA Streptococcus mutans UA159

62.154

91.036

0.566
  recA Lactococcus lactis subsp. cremoris KW2

62.229

90.476

0.563
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

89.916

0.56
  recA Latilactobacillus sakei subsp. sakei 23K

61.231

91.036

0.557
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.589

91.317

0.535