Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NHB23_RS01315 Genome accession   NZ_CP102716
Coordinates   289880..291067 (+) Length   395 a.a.
NCBI ID   WP_005688163.1    Uniprot ID   A0A171J5V4
Organism   Lacticaseibacillus rhamnosus strain DM065     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 284880..296067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NHB23_RS01295 (NHB23_001295) - 285490..287472 (+) 1983 WP_005690903.1 fructose-specific PTS transporter subunit EIIC -
  NHB23_RS01300 (NHB23_001300) - 287667..287900 (+) 234 WP_005690905.1 hypothetical protein -
  NHB23_RS01305 (NHB23_001305) - 288393..288866 (+) 474 WP_005690906.1 hypothetical protein -
  NHB23_RS01310 (NHB23_001310) - 288930..289631 (-) 702 WP_005690907.1 DUF554 domain-containing protein -
  NHB23_RS01315 (NHB23_001315) recA 289880..291067 (+) 1188 WP_005688163.1 recombinase RecA Machinery gene
  NHB23_RS01320 (NHB23_001320) - 291273..291599 (-) 327 WP_005688165.1 hypothetical protein -
  NHB23_RS01325 (NHB23_001325) - 291961..292266 (+) 306 WP_005690910.1 hypothetical protein -
  NHB23_RS01330 (NHB23_001330) - 292653..293855 (-) 1203 WP_014571663.1 PLP-dependent aminotransferase family protein -
  NHB23_RS01335 (NHB23_001335) - 294143..295045 (+) 903 WP_005685159.1 LysR family transcriptional regulator -
  NHB23_RS01340 (NHB23_001340) - 295051..295533 (-) 483 WP_005685160.1 ribonuclease H -

Sequence

Protein


Download         Length: 395 a.a.        Molecular weight: 42801.63 Da        Isoelectric Point: 5.6076

>NTDB_id=718522 NHB23_RS01315 WP_005688163.1 289880..291067(+) (recA) [Lacticaseibacillus rhamnosus strain DM065]
MAKKTTTKADNKKSDATDRETELEKALQKITKAFGEGAVMKMGDRPELKIDVVSTGILSLDLALGVGGLPRGRIVEIYGP
ESSGKTTIALQTIAELQKTGGKAAYIDAENAMDPKYAAELGVNIDDLLLSQPNSGEQGLEIAEMLIESAAVDVVVIDSVA
ALVPKAEIEGAIGDSHVGLQARLMSQALRKMAGTINNTNTLVIFINQLREKVGIVFGNPEVTPGGRALKFYASVRIEVRK
GQQVKDGKNVVGFASKLKVTKNKVAPPFKTVETTMSFGHGIEHNTDMINLATDKDNDLDVITKSGSWYNYGKERLGQGLV
NASHYLDEHPEVSKEIEAKIREQSAPKPKEEDEKKDTAKDEKTTADKKPEEKPTTDKKPDDKKDDPSSFGVDRLV

Nucleotide


Download         Length: 1188 bp        

>NTDB_id=718522 NHB23_RS01315 WP_005688163.1 289880..291067(+) (recA) [Lacticaseibacillus rhamnosus strain DM065]
ATGGCGAAAAAAACGACCACAAAAGCTGATAATAAAAAGTCTGATGCCACAGATCGTGAAACCGAATTAGAAAAGGCGCT
GCAAAAGATTACCAAGGCGTTCGGTGAAGGCGCGGTCATGAAGATGGGTGATCGACCGGAGTTGAAGATCGATGTGGTCT
CAACCGGGATTCTGTCATTGGATCTCGCTCTTGGTGTCGGTGGCTTACCACGGGGCCGGATCGTTGAAATTTATGGACCT
GAAAGTAGTGGGAAAACCACGATTGCGCTGCAGACGATTGCCGAATTACAAAAAACCGGTGGCAAGGCAGCTTATATTGA
CGCGGAAAATGCGATGGATCCAAAGTATGCTGCCGAGTTAGGCGTGAACATTGACGACCTTTTGCTTTCCCAACCAAATT
CGGGTGAACAAGGATTGGAAATCGCCGAGATGCTGATCGAATCGGCAGCGGTTGATGTTGTCGTGATCGACTCCGTAGCC
GCGCTGGTGCCAAAGGCTGAAATCGAGGGTGCAATTGGTGACAGTCACGTTGGCTTGCAAGCACGGCTGATGTCGCAGGC
ACTGCGAAAGATGGCCGGAACGATTAACAATACGAATACGTTGGTCATCTTCATTAACCAGTTACGTGAAAAAGTCGGCA
TTGTTTTTGGCAATCCGGAAGTCACCCCAGGCGGCCGGGCGCTGAAGTTTTACGCCTCTGTGCGCATTGAAGTACGCAAA
GGCCAGCAGGTTAAAGATGGTAAGAATGTCGTTGGGTTTGCCAGCAAGCTCAAGGTGACCAAGAATAAGGTGGCACCGCC
GTTTAAGACCGTTGAAACCACTATGTCGTTTGGGCACGGGATCGAGCACAATACTGACATGATCAACTTAGCGACTGATA
AAGACAACGATCTGGACGTTATCACCAAATCAGGCTCATGGTACAACTATGGTAAGGAGCGCCTCGGCCAAGGTCTGGTC
AATGCGTCTCATTATCTGGATGAGCATCCTGAAGTATCCAAGGAAATCGAAGCCAAGATCCGCGAGCAGTCCGCACCGAA
GCCAAAAGAAGAGGACGAAAAGAAGGATACTGCTAAAGACGAGAAAACAACGGCTGACAAGAAGCCTGAAGAGAAACCAA
CAACTGACAAAAAGCCGGATGATAAGAAAGATGATCCATCCAGCTTCGGGGTTGACCGTTTAGTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A171J5V4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pneumoniae Rx1

56.992

95.949

0.547
  recA Streptococcus pneumoniae D39

56.992

95.949

0.547
  recA Streptococcus pneumoniae R6

56.992

95.949

0.547
  recA Streptococcus pneumoniae TIGR4

56.992

95.949

0.547
  recA Streptococcus mitis SK321

57.067

94.937

0.542
  recA Streptococcus mitis NCTC 12261

56.8

94.937

0.539
  recA Latilactobacillus sakei subsp. sakei 23K

59.49

89.367

0.532
  recA Streptococcus mutans UA159

55.858

92.911

0.519
  recA Streptococcus pyogenes NZ131

59.13

87.342

0.516
  recA Lactococcus lactis subsp. cremoris KW2

58.601

86.835

0.509
  recA Bacillus subtilis subsp. subtilis str. 168

60.856

82.785

0.504
  recA Glaesserella parasuis strain SC1401

52.989

93.165

0.494
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.805

85.57

0.486
  recA Pseudomonas stutzeri DSM 10701

58.025

82.025

0.476
  recA Acinetobacter baylyi ADP1

53.409

89.114

0.476
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

53.582

88.354

0.473
  recA Ralstonia pseudosolanacearum GMI1000

57.994

80.759

0.468
  recA Neisseria gonorrhoeae MS11

57.643

79.494

0.458
  recA Neisseria gonorrhoeae strain FA1090

57.643

79.494

0.458
  recA Neisseria gonorrhoeae MS11

57.643

79.494

0.458
  recA Acinetobacter baumannii D1279779

55.763

81.266

0.453
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

53.538

82.278

0.441
  recA Vibrio cholerae O1 biovar El Tor strain E7946

53.231

82.278

0.438
  recA Vibrio cholerae strain A1552

53.231

82.278

0.438
  recA Helicobacter pylori strain NCTC11637

52.761

82.532

0.435
  recA Helicobacter pylori 26695

52.761

82.532

0.435