Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NUH86_RS12275 Genome accession   NZ_CP102664
Coordinates   2514799..2515872 (-) Length   357 a.a.
NCBI ID   WP_323748986.1    Uniprot ID   -
Organism   Sphingobium sp. JS3065     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 2514140..2514268 2514799..2515872 flank 531


Gene organization within MGE regions


Location: 2514140..2515872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUH86_RS12270 (NUH86_12270) - 2514377..2514601 (+) 225 Protein_2420 IS481 family transposase -
  NUH86_RS12275 (NUH86_12275) recA 2514799..2515872 (-) 1074 WP_323748986.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38386.05 Da        Isoelectric Point: 5.3701

>NTDB_id=718314 NUH86_RS12275 WP_323748986.1 2514799..2515872(-) (recA) [Sphingobium sp. JS3065]
MTAMLSLIDSKKTGTMDRQKALEAALSQIDRAFGKGSAMKLGSREKIEIESISTGSLGLDIALGIGGLPRGRIVEIYGPE
SSGKTTLALHAIAEAQKIGGIAAFVDAEHALDPGYAKKLGVDIDELIVSQPDTGEQALEIVDTLVRSNAIDVLVIDSVAA
LVPRAEIEGEMGDSHVGLQARLMSQALRKLTGSISRSRCLVIFINQVRMKIGVMYGNPETTTGGNALKFYASVRLDIRRT
GQIKDREDIVGNATRVKVVKNKVAPPFKQVEFDIMYGEGVSKIGELLDIGVKAGLVEKSGAWFSYDSVRIGQGRENAKTY
LKEHPEMAERLEKAIRGKTEEVAEGMMAGPEAEDDGE

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=718314 NUH86_RS12275 WP_323748986.1 2514799..2515872(-) (recA) [Sphingobium sp. JS3065]
ATGACCGCAATGCTCTCACTCATCGATTCCAAGAAGACAGGGACAATGGACAGACAGAAAGCATTGGAAGCGGCCCTTTC
CCAGATCGACCGTGCCTTTGGCAAGGGTTCGGCGATGAAGCTGGGCAGCCGCGAGAAGATTGAGATCGAATCGATCTCGA
CCGGATCGTTGGGGCTGGACATCGCGCTCGGCATCGGCGGCCTGCCGCGTGGGCGCATCGTGGAAATTTACGGCCCGGAA
AGTTCGGGCAAGACCACCCTGGCGTTGCACGCCATTGCCGAAGCGCAGAAGATCGGCGGCATCGCGGCCTTCGTTGACGC
GGAACATGCGCTCGACCCCGGTTATGCCAAGAAGCTGGGCGTCGATATCGACGAACTGATCGTATCGCAGCCCGACACCG
GCGAACAGGCGCTGGAGATCGTGGACACGCTGGTGCGGTCGAATGCGATCGACGTGCTGGTGATCGACTCGGTCGCGGCG
CTGGTGCCGCGCGCCGAAATCGAGGGCGAGATGGGCGACAGCCATGTCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCT
GCGCAAGCTGACCGGCTCCATCTCCCGCTCGCGCTGTCTGGTGATCTTCATCAACCAGGTTCGCATGAAGATCGGCGTCA
TGTACGGCAATCCGGAAACGACGACCGGCGGCAATGCGCTCAAATTCTACGCCTCGGTTCGCCTCGACATCCGCCGCACC
GGCCAGATCAAGGACCGCGAGGACATTGTCGGCAATGCGACCCGTGTGAAGGTGGTCAAGAACAAGGTTGCCCCACCCTT
CAAGCAGGTCGAATTCGACATCATGTATGGCGAGGGCGTGTCCAAGATCGGCGAACTGCTCGACATCGGCGTGAAGGCCG
GGCTGGTCGAGAAGTCGGGTGCCTGGTTCTCCTATGACTCGGTCCGCATCGGCCAGGGTCGGGAAAATGCGAAAACCTAT
CTGAAAGAACATCCCGAAATGGCGGAACGCCTGGAAAAGGCGATCCGCGGCAAGACCGAGGAAGTCGCCGAAGGGATGAT
GGCCGGACCCGAAGCGGAGGATGATGGCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(20-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

67.544

95.798

0.647
  recA Neisseria gonorrhoeae MS11

67.544

95.798

0.647
  recA Neisseria gonorrhoeae strain FA1090

67.544

95.798

0.647
  recA Pseudomonas stutzeri DSM 10701

68.343

94.678

0.647
  recA Glaesserella parasuis strain SC1401

70.533

89.356

0.63
  recA Vibrio cholerae strain A1552

70

89.636

0.627
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70

89.636

0.627
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.912

95.798

0.622
  recA Ralstonia pseudosolanacearum GMI1000

66.364

92.437

0.613
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.061

92.437

0.611
  recA Acinetobacter baumannii D1279779

67.5

89.636

0.605
  recA Acinetobacter baylyi ADP1

67.5

89.636

0.605
  recA Streptococcus pneumoniae TIGR4

62.5

96.359

0.602
  recA Streptococcus pneumoniae Rx1

62.5

96.359

0.602
  recA Streptococcus pneumoniae D39

62.5

96.359

0.602
  recA Streptococcus pneumoniae R6

62.5

96.359

0.602
  recA Streptococcus mitis SK321

61.383

97.199

0.597
  recA Streptococcus mitis NCTC 12261

61.628

96.359

0.594
  recA Bacillus subtilis subsp. subtilis str. 168

66.25

89.636

0.594
  recA Helicobacter pylori 26695

64.242

92.437

0.594
  recA Helicobacter pylori strain NCTC11637

63.939

92.437

0.591
  recA Streptococcus pyogenes NZ131

61.862

93.277

0.577
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.747

92.997

0.574
  recA Latilactobacillus sakei subsp. sakei 23K

63.438

89.636

0.569
  recA Lactococcus lactis subsp. cremoris KW2

61.027

92.717

0.566
  recA Streptococcus mutans UA159

60.121

92.717

0.557