Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NT239_RS03395 Genome accession   NZ_CP102611
Coordinates   737554..738597 (+) Length   347 a.a.
NCBI ID   WP_373975816.1    Uniprot ID   -
Organism   Chitinibacter sp. SCUT-21     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 732554..743597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NT239_RS03385 (NT239_03395) - 734121..735455 (-) 1335 WP_373975814.1 D-amino acid dehydrogenase -
  NT239_RS03390 (NT239_03400) - 735617..737470 (+) 1854 WP_373975815.1 ATP-binding protein -
  NT239_RS03395 (NT239_03405) recA 737554..738597 (+) 1044 WP_373975816.1 recombinase RecA Machinery gene
  NT239_RS03400 (NT239_03410) recX 738662..739129 (+) 468 WP_373975818.1 recombination regulator RecX -
  NT239_RS03405 (NT239_03415) alaS 739363..741981 (+) 2619 WP_373975819.1 alanine--tRNA ligase -
  NT239_RS03410 (NT239_03420) - 742098..742322 (+) 225 WP_373975820.1 DUF1653 domain-containing protein -
  NT239_RS03415 (NT239_03425) - 742377..743294 (+) 918 WP_373975821.1 DUF808 domain-containing protein -
  NT239_RS03420 (NT239_03430) - 743346..743525 (-) 180 WP_373975822.1 hypothetical protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37203.79 Da        Isoelectric Point: 5.1616

>NTDB_id=718135 NT239_RS03395 WP_373975816.1 737554..738597(+) (recA) [Chitinibacter sp. SCUT-21]
MDDNKSKALAAALAQIERQFGKGAIMKMGDNQIENDLQVVSTGSLGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLHVV
AEIQKLGGVAAYIDAENALDPIYAQKLGVNVSDMLISQPDTGEQALEIADMLVRSGGVDIIVVDSVAALTPKAEIEGEMG
DVHVGLQARLMSQALRKLTGNIKRTNTLVIFINQLRMKIGAMMPGQSPETTTGGNALKFYASVRLDIRRIGAVKKGEEII
GNQTKVKVAKNKVSPPFRVITFDILYGEGISREGEIIEQGVANKIVEKSGAWYSYNGNKIGQGLENSRQFLKDNPELAEE
IMQKVRGKLIGSSLPIEMGGENEEAAE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=718135 NT239_RS03395 WP_373975816.1 737554..738597(+) (recA) [Chitinibacter sp. SCUT-21]
ATGGATGACAACAAAAGCAAAGCGCTAGCCGCCGCCCTCGCCCAGATCGAACGCCAATTTGGTAAAGGCGCCATCATGAA
AATGGGCGACAACCAAATCGAAAATGATTTGCAAGTGGTTTCCACTGGCTCGCTCGGCTTGGACTTGGCACTGGGCGTGG
GTGGTTTACCACGCGGCCGTATTGTTGAAATCTTTGGACCTGAATCGTCAGGTAAAACCACGCTGTGTCTGCACGTGGTA
GCAGAAATTCAAAAACTCGGCGGCGTTGCGGCCTACATCGATGCGGAAAACGCGCTCGATCCAATCTACGCGCAAAAACT
CGGCGTGAATGTATCGGATATGCTGATTTCTCAGCCTGATACTGGCGAGCAAGCGCTGGAAATCGCCGATATGCTGGTAC
GCTCGGGTGGCGTTGACATTATCGTCGTTGACTCGGTGGCAGCCTTAACGCCAAAAGCCGAGATCGAAGGCGAAATGGGC
GACGTACACGTAGGTCTGCAAGCTCGCTTGATGAGTCAGGCGCTACGTAAACTGACGGGTAATATCAAACGTACCAACAC
GCTGGTGATCTTTATTAACCAGTTGCGCATGAAAATTGGCGCGATGATGCCAGGGCAAAGCCCAGAAACCACCACCGGTG
GTAATGCGCTGAAATTCTACGCCTCAGTTCGTTTGGACATCCGCCGTATCGGCGCGGTGAAAAAAGGCGAAGAAATCATT
GGTAACCAAACCAAGGTGAAGGTTGCCAAAAACAAAGTATCGCCACCATTCCGTGTGATCACGTTTGACATCTTGTACGG
CGAAGGTATTTCGCGTGAAGGCGAGATCATCGAGCAAGGCGTAGCCAACAAGATCGTCGAAAAATCAGGCGCTTGGTACA
GCTACAACGGCAATAAGATCGGCCAAGGCTTAGAAAACTCACGTCAATTCTTGAAAGACAACCCAGAATTAGCCGAAGAA
ATCATGCAAAAAGTACGTGGTAAATTGATTGGCAGCAGCTTGCCGATTGAAATGGGCGGCGAAAACGAAGAAGCTGCGGA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

72.334

100

0.723
  recA Neisseria gonorrhoeae strain FA1090

72.334

100

0.723
  recA Neisseria gonorrhoeae MS11

72.334

100

0.723
  recA Ralstonia pseudosolanacearum GMI1000

77.07

90.49

0.697
  recA Pseudomonas stutzeri DSM 10701

69.97

95.965

0.671
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.286

100

0.648
  recA Acinetobacter baylyi ADP1

68.182

95.101

0.648
  recA Glaesserella parasuis strain SC1401

68.502

94.236

0.646
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.273

95.101

0.64
  recA Vibrio cholerae strain A1552

67.273

95.101

0.64
  recA Acinetobacter baumannii D1279779

66.97

95.101

0.637
  recA Helicobacter pylori strain NCTC11637

64.724

93.948

0.608
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.363

95.965

0.608
  recA Helicobacter pylori 26695

64.417

93.948

0.605
  recA Latilactobacillus sakei subsp. sakei 23K

60.896

96.542

0.588
  recA Bacillus subtilis subsp. subtilis str. 168

62.848

93.084

0.585
  recA Streptococcus mutans UA159

60.366

94.524

0.571
  recA Lactococcus lactis subsp. cremoris KW2

59.451

94.524

0.562
  recA Streptococcus pyogenes NZ131

58.912

95.389

0.562
  recA Streptococcus pneumoniae D39

57.751

94.813

0.548
  recA Streptococcus pneumoniae Rx1

57.751

94.813

0.548
  recA Streptococcus pneumoniae R6

57.751

94.813

0.548
  recA Streptococcus pneumoniae TIGR4

57.751

94.813

0.548
  recA Streptococcus mitis NCTC 12261

58.282

93.948

0.548
  recA Streptococcus mitis SK321

58.282

93.948

0.548
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.453

92.795

0.533