Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NR800_RS34690 Genome accession   NZ_CP102579
Coordinates   8692708..8693733 (-) Length   341 a.a.
NCBI ID   WP_223741179.1    Uniprot ID   -
Organism   Corallococcus interemptor strain YZPH-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 8687708..8698733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NR800_RS34670 (NR800_34760) pssA 8688501..8689355 (+) 855 WP_375743359.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  NR800_RS34675 (NR800_34765) - 8689413..8690678 (+) 1266 WP_375743360.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  NR800_RS34680 (NR800_34770) - 8690675..8692144 (+) 1470 WP_375743361.1 hypothetical protein -
  NR800_RS34685 (NR800_34775) - 8692202..8692711 (+) 510 WP_223741180.1 DUF1285 domain-containing protein -
  NR800_RS34690 (NR800_34780) recA 8692708..8693733 (-) 1026 WP_223741179.1 recombinase RecA Machinery gene
  NR800_RS34695 (NR800_34785) - 8694015..8695394 (+) 1380 WP_375743362.1 NAD(P)/FAD-dependent oxidoreductase -
  NR800_RS34700 (NR800_34790) - 8695317..8696954 (-) 1638 WP_375743363.1 YifB family Mg chelatase-like AAA ATPase -
  NR800_RS34705 (NR800_34795) - 8697181..8697696 (-) 516 WP_223741176.1 biopolymer transporter ExbD -
  NR800_RS34710 (NR800_34800) - 8697696..8698109 (-) 414 WP_014394198.1 biopolymer transporter ExbD -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 35916.17 Da        Isoelectric Point: 7.0572

>NTDB_id=717781 NR800_RS34690 WP_223741179.1 8692708..8693733(-) (recA) [Corallococcus interemptor strain YZPH-2]
MSRLTEKLKAVAAAVASIEKQFGRGAVMTLGADAPEQKVAVIPTGSVGLDRALGVGGYPRGRVVELFGNESSGKTTLTLH
AIAQVQAVGGVAAFIDAEHALDLSYARKLGVRTEELLVAQPDTGEQALEITEQLVRSGAVDLIVVDSVAALVPRAEIEGE
MGDAHMGVQARLMSQALRKLTGAVSRSGTCIIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMEIRRTGNLKEGDAVV
GSRARVKVVKNKLAPPFQEAEFDVLYGTGIHRAAEVLDLAVSAGVVEKSGSHFSLRGERIGQGRERACEWLREHPDVLES
LARDLVGAAAPSVPSADAAAA

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=717781 NR800_RS34690 WP_223741179.1 8692708..8693733(-) (recA) [Corallococcus interemptor strain YZPH-2]
ATGAGCAGGCTGACGGAGAAGTTGAAGGCAGTGGCGGCGGCGGTGGCGTCCATCGAGAAGCAGTTCGGCCGGGGCGCGGT
GATGACGCTCGGCGCGGACGCACCGGAGCAGAAGGTGGCGGTCATTCCCACGGGTTCGGTAGGGTTGGACCGGGCGCTGG
GCGTGGGGGGGTATCCGCGAGGGCGCGTGGTGGAGCTGTTCGGCAACGAGTCCTCTGGCAAGACGACCCTCACCCTGCAC
GCCATCGCGCAGGTGCAGGCGGTGGGAGGCGTCGCGGCCTTCATCGACGCGGAGCACGCGCTGGACCTGTCCTACGCGCG
CAAGCTGGGCGTGCGCACGGAGGAGCTGCTCGTGGCGCAGCCGGACACCGGGGAGCAGGCGCTCGAAATCACCGAGCAGC
TCGTGCGCTCGGGCGCGGTGGACCTCATCGTGGTGGATTCGGTGGCGGCGCTGGTCCCCCGCGCGGAAATCGAAGGAGAG
ATGGGCGACGCGCACATGGGCGTCCAGGCGCGTCTGATGAGCCAGGCGCTGCGCAAGCTCACGGGCGCGGTGAGCCGCTC
CGGCACCTGCATCATCTTCATCAACCAGATCCGCATGAAGATTGGCGTGATGTTCGGCAACCCGGAGACGACGACGGGTG
GCAACGCGCTGAAGTTCTACGCGTCGGTGCGGATGGAGATCCGCCGCACGGGCAACCTCAAGGAAGGCGACGCGGTGGTG
GGCTCGAGGGCCCGCGTGAAGGTGGTGAAGAACAAGCTGGCGCCCCCGTTCCAGGAGGCGGAGTTCGACGTGCTCTACGG
CACGGGCATCCACCGCGCCGCCGAGGTGCTGGACCTGGCCGTGAGCGCGGGCGTGGTGGAGAAGTCGGGCAGCCACTTCA
GCCTGCGGGGTGAGCGCATCGGCCAGGGCCGCGAGCGGGCGTGCGAGTGGCTGCGGGAGCACCCCGACGTCCTGGAGTCC
CTCGCTCGAGACCTGGTGGGCGCCGCCGCGCCCTCCGTGCCGTCCGCGGACGCCGCGGCGGCCTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

66.773

91.789

0.613
  recA Pseudomonas stutzeri DSM 10701

64.688

93.842

0.607
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.95

93.548

0.598
  recA Vibrio cholerae strain A1552

63.95

93.548

0.598
  recA Acinetobacter baylyi ADP1

64.952

91.202

0.592
  recA Acinetobacter baumannii D1279779

63.323

93.548

0.592
  recA Glaesserella parasuis strain SC1401

60.119

98.534

0.592
  recA Neisseria gonorrhoeae strain FA1090

62.975

92.669

0.584
  recA Neisseria gonorrhoeae MS11

62.975

92.669

0.584
  recA Neisseria gonorrhoeae MS11

62.975

92.669

0.584
  recA Bacillus subtilis subsp. subtilis str. 168

61.905

92.375

0.572
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.813

94.135

0.563
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.063

93.255

0.56
  recA Helicobacter pylori 26695

56.548

98.534

0.557
  recA Helicobacter pylori strain NCTC11637

56.548

98.534

0.557
  recA Latilactobacillus sakei subsp. sakei 23K

60.897

91.496

0.557
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.846

95.308

0.551
  recA Streptococcus pyogenes NZ131

57.453

94.428

0.543
  recA Streptococcus pneumoniae TIGR4

56.173

95.015

0.534
  recA Streptococcus pneumoniae Rx1

56.173

95.015

0.534
  recA Streptococcus pneumoniae D39

56.173

95.015

0.534
  recA Streptococcus pneumoniae R6

56.173

95.015

0.534
  recA Lactococcus lactis subsp. cremoris KW2

56.563

93.842

0.531
  recA Streptococcus mutans UA159

56.25

93.842

0.528
  recA Streptococcus mitis SK321

56.467

92.962

0.525
  recA Streptococcus mitis NCTC 12261

55.625

93.842

0.522