Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NR792_RS33965 Genome accession   NZ_CP102577
Coordinates   8453214..8454239 (-) Length   341 a.a.
NCBI ID   WP_375756862.1    Uniprot ID   -
Organism   Corallococcus exercitus strain SDU142     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 8448214..8459239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NR792_RS33945 (NR792_34000) pssA 8448959..8449816 (+) 858 WP_375756858.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  NR792_RS33950 (NR792_34005) - 8449886..8451154 (+) 1269 WP_375756859.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  NR792_RS33955 (NR792_34010) - 8451151..8452650 (+) 1500 WP_375756860.1 hypothetical protein -
  NR792_RS33960 (NR792_34015) - 8452708..8453217 (+) 510 WP_375756861.1 DUF1285 domain-containing protein -
  NR792_RS33965 (NR792_34020) recA 8453214..8454239 (-) 1026 WP_375756862.1 recombinase RecA Machinery gene
  NR792_RS33970 (NR792_34025) - 8454521..8455900 (+) 1380 WP_375756863.1 NAD(P)/FAD-dependent oxidoreductase -
  NR792_RS33975 (NR792_34030) - 8455823..8457457 (-) 1635 WP_375761741.1 YifB family Mg chelatase-like AAA ATPase -
  NR792_RS33980 (NR792_34035) - 8457665..8458180 (-) 516 WP_375756864.1 ExbD/TolR family protein -
  NR792_RS33985 (NR792_34040) - 8458180..8458593 (-) 414 WP_014394198.1 biopolymer transporter ExbD -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 36016.28 Da        Isoelectric Point: 7.0573

>NTDB_id=717754 NR792_RS33965 WP_375756862.1 8453214..8454239(-) (recA) [Corallococcus exercitus strain SDU142]
MSRLTEKLKAVAAAVASIEKQFGRGAVMTLGADAPEQKVAVIPTGSVGLDRALGVGGYPRGRVVELFGNESSGKTTLTLH
AIAQVQAVGGVAAFIDAEHALDLSYARKLGVRTEELLVAQPDTGEQALEITEQLVRSGAVDLIVVDSVAALVPRAEIEGE
MGDAHMGVQARLMSQALRKLTGAVSRSGTCIIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMEIRRTGNLKEGDAVV
GSRARVKVVKNKLAPPFQEAEFDVLYGTGIHRAAEVLDLAVSSGVVEKSGSHFSLRGERIGQGRERACEWLREHPDVLEA
LARDLVGTTAPSVPPASAEAA

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=717754 NR792_RS33965 WP_375756862.1 8453214..8454239(-) (recA) [Corallococcus exercitus strain SDU142]
ATGAGCAGGCTGACGGAGAAGTTGAAGGCAGTGGCGGCGGCGGTGGCGTCCATCGAGAAGCAGTTCGGCCGGGGCGCGGT
GATGACGCTCGGCGCGGACGCACCGGAGCAGAAGGTGGCGGTCATCCCCACGGGCTCGGTGGGGTTGGACCGGGCGCTGG
GCGTGGGGGGCTATCCGCGAGGACGCGTGGTGGAGCTGTTCGGCAACGAGTCCTCCGGCAAGACGACGCTCACCCTGCAT
GCGATTGCCCAGGTGCAGGCGGTGGGAGGCGTGGCGGCCTTCATCGACGCGGAGCACGCGCTGGACCTGTCCTATGCGCG
CAAGTTGGGGGTGCGCACGGAGGAACTGCTCGTGGCGCAACCGGACACCGGTGAGCAGGCGCTCGAAATCACCGAGCAGC
TCGTGCGCTCGGGCGCCGTGGACCTCATCGTGGTGGACTCGGTGGCGGCGTTGGTGCCCCGCGCGGAAATCGAAGGGGAG
ATGGGGGACGCGCACATGGGCGTCCAGGCGCGGCTGATGAGTCAGGCCCTGCGGAAGCTCACCGGCGCCGTGAGCCGTTC
GGGCACCTGCATCATCTTCATCAACCAGATCCGCATGAAGATTGGCGTGATGTTCGGCAACCCGGAGACGACGACGGGTG
GCAACGCGCTGAAGTTCTACGCGTCGGTGCGAATGGAGATCCGCCGTACGGGCAACCTCAAGGAGGGTGACGCGGTGGTG
GGCTCGCGGGCCCGCGTGAAGGTGGTGAAGAACAAGCTGGCGCCCCCGTTCCAGGAGGCGGAGTTCGACGTGCTCTACGG
CACGGGCATCCACCGCGCCGCCGAGGTGCTGGACCTGGCCGTGAGCTCGGGCGTGGTGGAGAAGTCGGGCAGCCACTTCA
GCCTGCGGGGTGAGCGCATCGGCCAGGGCCGCGAGCGGGCGTGCGAGTGGCTGCGAGAGCACCCGGACGTCCTGGAGGCC
CTCGCCCGGGACCTGGTGGGAACCACGGCGCCTTCCGTGCCGCCCGCGTCCGCCGAGGCCGCCTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

66.349

92.375

0.613
  recA Acinetobacter baylyi ADP1

62.202

98.534

0.613
  recA Pseudomonas stutzeri DSM 10701

66.346

91.496

0.607
  recA Vibrio cholerae strain A1552

63.95

93.548

0.598
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.95

93.548

0.598
  recA Acinetobacter baumannii D1279779

63.323

93.548

0.592
  recA Glaesserella parasuis strain SC1401

61.162

95.894

0.587
  recA Neisseria gonorrhoeae MS11

62.975

92.669

0.584
  recA Neisseria gonorrhoeae MS11

62.975

92.669

0.584
  recA Neisseria gonorrhoeae strain FA1090

62.975

92.669

0.584
  recA Bacillus subtilis subsp. subtilis str. 168

61.905

92.375

0.572
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.813

94.135

0.563
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.063

93.255

0.56
  recA Latilactobacillus sakei subsp. sakei 23K

60.897

91.496

0.557
  recA Helicobacter pylori 26695

60.518

90.616

0.548
  recA Helicobacter pylori strain NCTC11637

60.518

90.616

0.548
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.764

94.428

0.545
  recA Streptococcus pyogenes NZ131

57.453

94.428

0.543
  recA Streptococcus pneumoniae TIGR4

56.173

95.015

0.534
  recA Streptococcus pneumoniae Rx1

56.173

95.015

0.534
  recA Streptococcus pneumoniae D39

56.173

95.015

0.534
  recA Streptococcus pneumoniae R6

56.173

95.015

0.534
  recA Lactococcus lactis subsp. cremoris KW2

56.563

93.842

0.531
  recA Streptococcus mutans UA159

56.25

93.842

0.528
  recA Streptococcus mitis SK321

56.467

92.962

0.525
  recA Streptococcus mitis NCTC 12261

55.625

93.842

0.522