Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NR792_RS33635 Genome accession   NZ_CP102577
Coordinates   8355090..8356175 (+) Length   361 a.a.
NCBI ID   WP_375756801.1    Uniprot ID   -
Organism   Corallococcus exercitus strain SDU142     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 8350090..8361175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NR792_RS33605 (NR792_33660) glmS 8350366..8352201 (+) 1836 WP_375756795.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  NR792_RS33610 (NR792_33665) - 8352277..8352543 (-) 267 WP_375756796.1 hypothetical protein -
  NR792_RS33615 (NR792_33670) - 8352540..8353040 (-) 501 WP_375756797.1 DUF3106 domain-containing protein -
  NR792_RS33620 (NR792_33675) - 8353040..8353528 (-) 489 WP_375756798.1 anti-sigma factor family protein -
  NR792_RS33625 (NR792_33680) - 8353525..8354127 (-) 603 WP_375756799.1 RNA polymerase sigma factor -
  NR792_RS33630 (NR792_33685) - 8354276..8354977 (+) 702 WP_375756800.1 hypothetical protein -
  NR792_RS33635 (NR792_33690) recA 8355090..8356175 (+) 1086 WP_375756801.1 recombinase RecA Machinery gene
  NR792_RS33640 (NR792_33695) - 8356345..8358570 (+) 2226 WP_375756802.1 alkaline phosphatase D family protein -
  NR792_RS33645 (NR792_33700) - 8358731..8360788 (+) 2058 WP_375756803.1 glycosyl hydrolase family 28-related protein -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 38835.62 Da        Isoelectric Point: 6.8716

>NTDB_id=717753 NR792_RS33635 WP_375756801.1 8355090..8356175(+) (recA) [Corallococcus exercitus strain SDU142]
MAVNQEKEKAIELALAAVERQFGKGSIMRLGNDEPMMKDVQAISTGSTSLDIALGVGGVPRGRIIEIFGPESSGKTTLCL
HIVAEAQKKGGVCGYIDAEHAMDVGYARKLGVRTDDLLLSQPDTGEQGLEIAEMLVRSGAIDVLVVDSVAALVPKAELEG
EMGDAHMGVQARLMSQALRKLTGTISKSQTCVIFINQIRMKIGVMFGNPETTTGGNALKFYASQRMDIRRVGAIKNGENV
VGSRTRVKVVKNKVAPPFKEVEFDIMYGAGISKEGDLIDLASNENIIEKSGSWFSFKGERIGQGRENAKEYLREHPETYK
EVESLVLEKYGIGKAPGAAAPAAEASEPAEGEKRPRVKAVK

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=717753 NR792_RS33635 WP_375756801.1 8355090..8356175(+) (recA) [Corallococcus exercitus strain SDU142]
ATGGCCGTGAATCAGGAGAAGGAAAAGGCGATCGAGTTGGCGCTGGCCGCGGTGGAGCGCCAGTTCGGCAAGGGGTCCAT
CATGCGGCTCGGCAACGACGAGCCCATGATGAAGGACGTCCAGGCCATTTCGACGGGGTCCACTTCGCTCGACATCGCCC
TGGGCGTGGGCGGCGTGCCGCGCGGGCGCATCATTGAAATCTTCGGGCCGGAGTCCTCCGGCAAGACGACACTGTGCCTC
CACATCGTCGCGGAGGCGCAGAAGAAGGGCGGCGTGTGCGGCTACATCGACGCCGAGCACGCGATGGACGTGGGCTACGC
GCGCAAGCTGGGCGTGCGCACCGACGACCTGCTCCTGTCCCAGCCGGACACCGGTGAGCAGGGCCTCGAAATCGCGGAGA
TGCTCGTGCGCTCCGGCGCCATCGACGTGCTGGTGGTGGACTCGGTGGCCGCGCTCGTGCCGAAGGCGGAACTCGAGGGT
GAGATGGGTGACGCGCACATGGGCGTGCAGGCGCGCCTCATGAGCCAGGCCCTGCGCAAGCTCACGGGCACCATCTCCAA
GAGCCAGACGTGCGTCATCTTCATCAACCAGATCCGCATGAAGATTGGCGTGATGTTCGGCAACCCGGAGACCACCACGG
GCGGCAACGCGCTGAAGTTCTACGCGTCGCAGCGCATGGACATCCGCCGCGTGGGCGCCATCAAGAACGGCGAGAACGTG
GTGGGCAGCCGCACCCGCGTGAAGGTCGTGAAGAACAAGGTCGCGCCTCCCTTCAAGGAGGTGGAGTTCGACATCATGTA
CGGCGCGGGCATCTCGAAGGAGGGCGACCTCATCGACCTCGCGTCCAACGAGAACATCATCGAGAAGAGCGGCAGCTGGT
TCTCCTTCAAGGGAGAGCGCATCGGCCAGGGCCGGGAGAACGCGAAGGAGTACCTGCGCGAGCACCCGGAGACCTACAAG
GAGGTCGAGAGCCTGGTGCTGGAGAAGTACGGCATCGGCAAGGCGCCGGGCGCGGCGGCTCCGGCGGCCGAGGCCAGCGA
GCCCGCGGAAGGCGAGAAGCGCCCGCGCGTGAAGGCCGTGAAGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

66.97

91.413

0.612
  recA Latilactobacillus sakei subsp. sakei 23K

64.012

93.906

0.601
  recA Pseudomonas stutzeri DSM 10701

62.281

94.737

0.59
  recA Vibrio cholerae strain A1552

66.044

88.92

0.587
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.044

88.92

0.587
  recA Neisseria gonorrhoeae MS11

64.815

89.751

0.582
  recA Neisseria gonorrhoeae strain FA1090

64.815

89.751

0.582
  recA Neisseria gonorrhoeae MS11

64.815

89.751

0.582
  recA Acinetobacter baylyi ADP1

60.405

95.845

0.579
  recA Glaesserella parasuis strain SC1401

64.89

88.366

0.573
  recA Streptococcus pneumoniae TIGR4

61.934

91.69

0.568
  recA Streptococcus pneumoniae Rx1

61.934

91.69

0.568
  recA Streptococcus pneumoniae D39

61.934

91.69

0.568
  recA Streptococcus pneumoniae R6

61.934

91.69

0.568
  recA Helicobacter pylori strain NCTC11637

61.747

91.967

0.568
  recA Acinetobacter baumannii D1279779

62.691

90.582

0.568
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.631

91.69

0.565
  recA Helicobacter pylori 26695

61.145

91.967

0.562
  recA Bacillus subtilis subsp. subtilis str. 168

61.774

90.582

0.56
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.037

89.751

0.557
  recA Streptococcus mitis NCTC 12261

60.725

91.69

0.557
  recA Streptococcus mitis SK321

60.725

91.69

0.557
  recA Streptococcus pyogenes NZ131

57.593

96.676

0.557
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.241

91.967

0.554
  recA Lactococcus lactis subsp. cremoris KW2

58.006

91.69

0.532
  recA Streptococcus mutans UA159

57.704

91.69

0.529