Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NUU09_RS06960 Genome accession   NZ_CP102533
Coordinates   1453011..1454102 (-) Length   363 a.a.
NCBI ID   WP_003546531.1    Uniprot ID   -
Organism   Lactobacillus acidophilus strain LA-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1448011..1459102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUU09_RS06945 (NUU09_06945) - 1449304..1449966 (+) 663 WP_003546537.1 YigZ family protein -
  NUU09_RS06950 (NUU09_06950) - 1449992..1451161 (-) 1170 WP_003546535.1 glycosyltransferase family 4 protein -
  NUU09_RS06955 (NUU09_06955) rny 1451262..1452893 (-) 1632 WP_003546533.1 ribonuclease Y -
  NUU09_RS06960 (NUU09_06960) recA 1453011..1454102 (-) 1092 WP_003546531.1 recombinase RecA Machinery gene
  NUU09_RS06965 (NUU09_06965) pgsA 1454279..1454839 (-) 561 WP_003546529.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NUU09_RS06970 (NUU09_06970) - 1454862..1455986 (-) 1125 WP_003546527.1 RodZ family helix-turn-helix domain-containing protein -
  NUU09_RS06975 (NUU09_06975) ymfI 1456054..1456782 (-) 729 WP_003546523.1 elongation factor P 5-aminopentanone reductase -
  NUU09_RS06980 (NUU09_06980) - 1456787..1458040 (-) 1254 WP_021874185.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 39369.75 Da        Isoelectric Point: 6.3291

>NTDB_id=717549 NUU09_RS06960 WP_003546531.1 1453011..1454102(-) (recA) [Lactobacillus acidophilus strain LA-2]
MAKDEKKAALDAALKKIEKNFGKGAVMRMGEKADTQISTVPTGSLALDAAIGVGGYPRGRIIEVYGPESSGKTTVALHAV
AEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMG
DAHVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQIKQSGDVLGN
RVKIKVVKNKVAPPFKVAEVDIMYGKGISQSGELLDMAADKDIIDKAGSWYSYKSDRIGQGRENAKKYLEEHPDIYQKVQ
EQVRQAYGIDEKSIADRENPEKIKEKREETSEENKTDNSEKTK

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=717549 NUU09_RS06960 WP_003546531.1 1453011..1454102(-) (recA) [Lactobacillus acidophilus strain LA-2]
ATGGCCAAAGATGAAAAAAAGGCTGCTTTAGATGCAGCGCTCAAAAAAATCGAAAAGAATTTCGGTAAAGGTGCTGTCAT
GCGCATGGGTGAAAAAGCAGACACACAAATTTCTACAGTTCCCACAGGTTCTCTTGCTTTAGATGCTGCTATTGGCGTTG
GTGGATACCCTCGCGGCCGAATTATCGAAGTTTATGGTCCCGAATCATCTGGTAAGACTACTGTAGCACTTCATGCTGTT
GCTGAAGTACAAAAGCGTGGAGGCACCGCTGCGTATATTGATGCAGAAAATGCGATGGATCCAGCTTATGCCGAGGCACT
TGGAGTAGATATTGATTCACTTATCTTGTCTCAACCTAATACCGGTGAAGAAGGTTTGCAAATTGCTGATACTTTAATTT
CTAGTGGTGCTATTGATATTGTGGTAGTTGACTCAGTTGCTGCGTTAGTACCACGTGCTGAAATTGAAGGAGAAATGGGT
GATGCTCATGTAGGTCTTCAGGCTAGACTTATGAGTCAAGCTTTACGTAAGCTTTCCGGTACCATTTCTAAGACTAAGAC
AATTGCGATTTTTATTAATCAGATTCGTGAAAAAGTCGGTGTTATGTTTGGTAATCCGGAAACAACACCGGGTGGTCGAG
CACTTAAGTTCTATTCAACTGTTCGTCTTGAAGTAAGAAGAGCTGAACAAATTAAGCAATCAGGCGATGTTTTAGGTAAC
CGAGTAAAAATTAAAGTGGTAAAAAACAAGGTTGCTCCACCATTTAAGGTCGCAGAAGTAGATATCATGTATGGTAAAGG
TATTTCTCAAAGTGGCGAATTACTTGACATGGCTGCGGATAAGGATATTATCGATAAAGCTGGATCATGGTATTCATATA
AGAGCGATCGAATTGGTCAAGGCCGTGAAAATGCTAAGAAGTATCTTGAGGAACATCCAGATATTTATCAAAAAGTTCAA
GAGCAAGTACGTCAAGCATATGGTATTGATGAAAAATCCATTGCTGATCGTGAAAATCCTGAAAAAATAAAGGAAAAACG
TGAAGAAACTTCAGAAGAAAATAAGACTGATAATTCTGAAAAGACAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

81.873

91.185

0.747
  recA Bacillus subtilis subsp. subtilis str. 168

73.333

90.909

0.667
  recA Streptococcus pneumoniae D39

66.111

99.174

0.656
  recA Streptococcus pneumoniae R6

66.111

99.174

0.656
  recA Streptococcus pneumoniae TIGR4

66.111

99.174

0.656
  recA Streptococcus pneumoniae Rx1

66.111

99.174

0.656
  recA Streptococcus mutans UA159

65.722

97.245

0.639
  recA Streptococcus mitis NCTC 12261

67.544

94.215

0.636
  recA Streptococcus pyogenes NZ131

68.997

90.634

0.625
  recA Streptococcus mitis SK321

68.389

90.634

0.62
  recA Lactococcus lactis subsp. cremoris KW2

65.766

91.736

0.603
  recA Neisseria gonorrhoeae MS11

59.078

95.592

0.565
  recA Neisseria gonorrhoeae MS11

59.078

95.592

0.565
  recA Neisseria gonorrhoeae strain FA1090

59.078

95.592

0.565
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.366

90.358

0.545
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.522

93.388

0.537
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.062

88.981

0.534
  recA Acinetobacter baumannii D1279779

59.752

88.981

0.532
  recA Acinetobacter baylyi ADP1

59.317

88.705

0.526
  recA Helicobacter pylori strain NCTC11637

55.556

94.215

0.523
  recA Helicobacter pylori 26695

55.556

94.215

0.523
  recA Pseudomonas stutzeri DSM 10701

59.19

88.43

0.523
  recA Glaesserella parasuis strain SC1401

53.561

96.694

0.518
  recA Ralstonia pseudosolanacearum GMI1000

58.786

86.226

0.507
  recA Vibrio cholerae strain A1552

56.832

88.705

0.504
  recA Vibrio cholerae O1 biovar El Tor strain E7946

56.832

88.705

0.504