Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NUT31_RS13320 Genome accession   NZ_CP102454
Coordinates   2982204..2983268 (-) Length   354 a.a.
NCBI ID   WP_040068994.1    Uniprot ID   A0A0K0MKD4
Organism   Aeromonas sp. BC14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2977204..2988268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUT31_RS13305 (NUT31_13300) - 2977314..2978561 (-) 1248 WP_268013807.1 aspartate kinase -
  NUT31_RS13310 (NUT31_13305) alaS 2978578..2981202 (-) 2625 WP_268013808.1 alanine--tRNA ligase -
  NUT31_RS13315 (NUT31_13310) - 2981661..2982161 (-) 501 WP_076361851.1 regulatory protein RecX -
  NUT31_RS13320 (NUT31_13315) recA 2982204..2983268 (-) 1065 WP_040068994.1 recombinase RecA Machinery gene
  NUT31_RS13325 (NUT31_13320) pncC 2983349..2983840 (-) 492 WP_033115928.1 nicotinamide-nucleotide amidase -
  NUT31_RS13330 (NUT31_13325) mutS 2984075..2986657 (+) 2583 WP_268013812.1 DNA mismatch repair protein MutS -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38003.69 Da        Isoelectric Point: 4.8912

>NTDB_id=717125 NUT31_RS13320 WP_040068994.1 2982204..2983268(-) (recA) [Aeromonas sp. BC14]
MDQNKQKALAAALGQIEKQFGKGSIMRLGDSKTMDIEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIA
EAQKKGKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIEGEMGD
SHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGNE
TRVKVVKNKVAPPFKQAEFQIFYGAGISKEGELVDLGVKHKLIDKAGAWYSYNGEKIGQGKANVMKLFAENKVMAGEVEA
RLRELLLSGAVPVDDKAAPVEAEEFDAESEQEFE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=717125 NUT31_RS13320 WP_040068994.1 2982204..2983268(-) (recA) [Aeromonas sp. BC14]
ATGGATCAGAACAAACAGAAGGCACTGGCGGCTGCGCTGGGTCAGATTGAAAAGCAGTTCGGCAAAGGCTCCATCATGCG
TCTGGGCGACAGCAAGACCATGGATATCGAAGCCATCTCCACCGGCTCCCTCTCTCTGGACGTGGCGCTGGGGATCGGTG
GTCTGCCGTGCGGTCGTATCGTCGAGATCTACGGCCCGGAATCTTCCGGTAAAACCACGCTGACCCTGCAGGTGATCGCC
GAAGCCCAGAAGAAGGGCAAGACCTGTGCTTTCGTCGATGCGGAGCACGCGCTGGATCCCATCTATGCCGCCAAGCTGGG
CGTCAACGTCGACGACCTGCTCATCTCCCAGCCGGATACCGGTGAACAGGCGCTGGAGATCTGCGACATGCTGGTGCGCT
CCAACGCCGTTGACGTCATCATCGTCGACTCCGTGGCGGCCCTGACTCCGAAAGCGGAAATCGAAGGCGAGATGGGTGAC
TCCCACGTTGGCCTGCAGGCCCGTCTGATGTCCCAGGCGCTGCGCAAGCTGACCGCCAACATCAAGAACGCCAACTGCCT
GTGTATCTTCATCAACCAGATCCGGATGAAAATCGGCGTCATGTTCGGCAGCCCGGAGACCACCACGGGTGGTAACGCGC
TCAAGTTTTACGCCTCCGTGCGTCTGGATATCCGTCGCATCGGCGCCATCAAGGAAGGTGACGAAGTGGTCGGTAATGAG
ACCCGCGTCAAAGTGGTCAAGAACAAGGTGGCCCCGCCCTTCAAGCAGGCCGAATTCCAGATCTTCTACGGTGCCGGTAT
CTCCAAAGAGGGCGAGCTGGTGGATCTGGGCGTCAAGCACAAGCTGATCGACAAGGCCGGTGCCTGGTACAGCTACAACG
GCGAGAAGATCGGTCAGGGCAAGGCCAACGTCATGAAGCTGTTTGCCGAGAACAAGGTGATGGCTGGCGAAGTGGAAGCC
CGCCTGCGCGAGCTGCTGCTCTCCGGTGCCGTACCAGTCGATGACAAGGCTGCACCGGTTGAGGCAGAAGAGTTCGATGC
CGAAAGCGAACAAGAGTTCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K0MKD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

76.724

98.305

0.754
  recA Vibrio cholerae O1 biovar El Tor strain E7946

78.659

92.655

0.729
  recA Vibrio cholerae strain A1552

78.659

92.655

0.729
  recA Acinetobacter baumannii D1279779

72.886

96.893

0.706
  recA Acinetobacter baylyi ADP1

72.674

97.175

0.706
  recA Glaesserella parasuis strain SC1401

70.255

99.718

0.701
  recA Ralstonia pseudosolanacearum GMI1000

72.644

92.938

0.675
  recA Neisseria gonorrhoeae MS11

71.779

92.09

0.661
  recA Neisseria gonorrhoeae MS11

71.779

92.09

0.661
  recA Neisseria gonorrhoeae strain FA1090

71.779

92.09

0.661
  recA Helicobacter pylori strain NCTC11637

61.383

98.023

0.602
  recA Helicobacter pylori 26695

60.807

98.023

0.596
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.444

93.503

0.593
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.517

90.113

0.59
  recA Bacillus subtilis subsp. subtilis str. 168

63.24

90.678

0.573
  recA Latilactobacillus sakei subsp. sakei 23K

60.725

93.503

0.568
  recA Streptococcus pneumoniae TIGR4

61.61

91.243

0.562
  recA Streptococcus pneumoniae Rx1

61.61

91.243

0.562
  recA Streptococcus pneumoniae D39

61.61

91.243

0.562
  recA Streptococcus pneumoniae R6

61.61

91.243

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.366

92.655

0.559
  recA Streptococcus mitis SK321

61.3

91.243

0.559
  recA Streptococcus mitis NCTC 12261

61.3

91.243

0.559
  recA Streptococcus mutans UA159

60.372

91.243

0.551
  recA Streptococcus pyogenes NZ131

60.062

91.243

0.548
  recA Lactococcus lactis subsp. cremoris KW2

57.895

91.243

0.528