Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   G314FT_RS00585 Genome accession   NZ_CP102451
Coordinates   102205..103263 (-) Length   352 a.a.
NCBI ID   WP_257701624.1    Uniprot ID   -
Organism   Vagococcus luciliae strain G314F     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 97205..108263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G314FT_RS00575 (G314FT_01150) - 99718..100062 (-) 345 WP_257701622.1 DUF4822 domain-containing protein -
  G314FT_RS00580 (G314FT_01160) rny 100399..101955 (-) 1557 WP_257701623.1 ribonuclease Y -
  G314FT_RS00585 (G314FT_01170) recA 102205..103263 (-) 1059 WP_257701624.1 recombinase RecA Machinery gene
  G314FT_RS00590 (G314FT_01180) - 103360..104574 (-) 1215 WP_257701625.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  G314FT_RS00595 (G314FT_01190) sdaAB 104718..105377 (+) 660 WP_257701626.1 L-serine ammonia-lyase, iron-sulfur-dependent subunit beta -
  G314FT_RS00600 (G314FT_01200) sdaAA 105391..106266 (+) 876 WP_257701627.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  G314FT_RS00605 (G314FT_01210) - 106319..107527 (-) 1209 WP_257701628.1 NAD(P)/FAD-dependent oxidoreductase -
  G314FT_RS00610 (G314FT_01220) - 107624..107917 (-) 294 WP_117972495.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37988.03 Da        Isoelectric Point: 4.6918

>NTDB_id=717050 G314FT_RS00585 WP_257701624.1 102205..103263(-) (recA) [Vagococcus luciliae strain G314F]
MADNRKAALDAALKKIEKDFGKGSVMKLGEKVDTQISTVSSGSLALDSALGVGGYPRGRIVEVYGPESSGKTTVALHAIA
SVQKAGGTAAFIDAEHALDPKYASALGVNIDELLLSQPDTGEQGLNIAEALVSSGAIDIVVVDSVAALVPRAEIDGEMGD
SHVGLQARLMSQALRKLSGTINKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRAEQLKSGTDIIGNR
TKIKVVKNKVAPPFRIAEVDIMYGEGISQEGELLDMAADKDIVNKSGAWYSYQDERIGQGRENAKKYLAEHSEMMEEIYQ
KVRLAYNMDGVEPEDVEEENEKLEEISVESED

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=717050 G314FT_RS00585 WP_257701624.1 102205..103263(-) (recA) [Vagococcus luciliae strain G314F]
ATGGCGGATAATCGTAAAGCAGCCTTAGATGCTGCGTTAAAAAAAATAGAAAAAGATTTTGGTAAAGGTTCAGTGATGAA
ATTGGGAGAGAAAGTGGATACACAAATTTCAACAGTATCTAGTGGCTCTCTTGCTTTAGATTCTGCCTTAGGTGTTGGCG
GATACCCACGAGGAAGAATTGTGGAAGTATACGGTCCAGAAAGTTCCGGTAAAACTACGGTTGCGTTACACGCTATTGCT
TCAGTTCAAAAAGCTGGTGGAACGGCTGCCTTTATCGATGCAGAGCATGCATTAGATCCTAAATATGCGAGCGCATTAGG
GGTCAATATTGATGAGTTATTGTTATCGCAGCCAGATACTGGAGAACAGGGTTTAAATATTGCGGAAGCATTAGTCTCTA
GTGGAGCGATTGATATTGTTGTAGTCGATTCTGTTGCAGCACTTGTACCAAGAGCTGAAATTGATGGAGAAATGGGAGAT
TCACATGTTGGTCTGCAAGCTCGTTTGATGTCACAAGCGTTAAGAAAATTATCCGGGACAATCAATAAAACGAAAACCAT
TGCTATTTTTATCAACCAAATTCGTGAAAAAGTTGGTGTGATGTTTGGAAATCCAGAAACAACACCAGGAGGACGTGCTT
TAAAATTTTATGCTACAGTTCGTCTTGAAGTTCGTCGAGCCGAACAATTAAAATCTGGAACGGATATTATTGGTAATCGT
ACTAAGATTAAAGTAGTAAAAAACAAAGTAGCGCCACCATTTAGAATAGCAGAAGTAGATATCATGTATGGAGAAGGAAT
CTCGCAAGAGGGTGAATTACTTGATATGGCTGCTGATAAGGATATCGTCAATAAAAGTGGTGCATGGTATTCTTATCAAG
ATGAACGTATTGGTCAAGGCCGTGAAAATGCGAAAAAATATTTGGCTGAACACTCAGAGATGATGGAAGAGATTTATCAA
AAAGTGCGTTTAGCTTATAATATGGATGGTGTAGAACCTGAAGACGTAGAAGAAGAAAATGAAAAATTAGAGGAAATATC
TGTCGAATCAGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

78.571

99.432

0.781
  recA Bacillus subtilis subsp. subtilis str. 168

79.448

92.614

0.736
  recA Streptococcus pneumoniae D39

71.304

98.011

0.699
  recA Streptococcus pneumoniae R6

71.304

98.011

0.699
  recA Streptococcus pneumoniae TIGR4

71.304

98.011

0.699
  recA Streptococcus pneumoniae Rx1

71.304

98.011

0.699
  recA Streptococcus mutans UA159

68.347

100

0.693
  recA Streptococcus mitis NCTC 12261

72.072

94.602

0.682
  recA Streptococcus mitis SK321

72.072

94.602

0.682
  recA Streptococcus pyogenes NZ131

72.121

93.75

0.676
  recA Lactococcus lactis subsp. cremoris KW2

71.037

93.182

0.662
  recA Glaesserella parasuis strain SC1401

60.684

99.716

0.605
  recA Acinetobacter baumannii D1279779

60.92

98.864

0.602
  recA Neisseria gonorrhoeae MS11

63.063

94.602

0.597
  recA Neisseria gonorrhoeae MS11

63.063

94.602

0.597
  recA Neisseria gonorrhoeae strain FA1090

63.063

94.602

0.597
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.024

93.182

0.597
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.308

92.33

0.594
  recA Acinetobacter baylyi ADP1

64.087

91.761

0.588
  recA Ralstonia pseudosolanacearum GMI1000

62.349

94.318

0.588
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.058

97.443

0.585
  recA Vibrio cholerae strain A1552

61.61

91.761

0.565
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.61

91.761

0.565
  recA Pseudomonas stutzeri DSM 10701

61.61

91.761

0.565
  recA Helicobacter pylori strain NCTC11637

61.801

91.477

0.565
  recA Helicobacter pylori 26695

61.801

91.477

0.565