Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NRF19_RS15505 Genome accession   NZ_CP102377
Coordinates   2804355..2805413 (+) Length   352 a.a.
NCBI ID   WP_103180881.1    Uniprot ID   -
Organism   Leclercia adecarboxylata strain M17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2799355..2810413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRF19_RS15475 (NRF19_15435) srlD 2799561..2800340 (-) 780 WP_103180887.1 sorbitol-6-phosphate dehydrogenase -
  NRF19_RS15480 (NRF19_15440) srlB 2800355..2800717 (-) 363 WP_327059660.1 PTS glucitol/sorbitol transporter subunit IIA -
  NRF19_RS15485 (NRF19_15445) - 2800730..2801689 (-) 960 WP_103822670.1 PTS glucitol/sorbitol transporter subunit IIB -
  NRF19_RS15490 (NRF19_15450) srlA 2801686..2802249 (-) 564 WP_103822669.1 PTS glucitol/sorbitol transporter subunit IIC -
  NRF19_RS15495 (NRF19_15455) mltB 2802517..2803608 (+) 1092 WP_168194453.1 lytic murein transglycosylase B -
  NRF19_RS15500 (NRF19_15460) pncC 2803770..2804267 (+) 498 WP_114316935.1 nicotinamide-nucleotide amidase -
  NRF19_RS15505 (NRF19_15465) recA 2804355..2805413 (+) 1059 WP_103180881.1 recombinase RecA Machinery gene
  NRF19_RS15510 (NRF19_15470) recX 2805481..2805981 (+) 501 WP_114385878.1 recombination regulator RecX -
  NRF19_RS15515 (NRF19_15475) alaS 2806113..2808740 (+) 2628 WP_114385879.1 alanine--tRNA ligase -
  NRF19_RS15520 (NRF19_15480) csrA 2808982..2809167 (+) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37884.24 Da        Isoelectric Point: 4.7460

>NTDB_id=716640 NRF19_RS15505 WP_103180881.1 2804355..2805413(+) (recA) [Leclercia adecarboxylata strain M17]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
VAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGDKIGQGKANAISWLKENPAAAKEI
EKKVRDLLLNNQDAKPDFTADDADVEETNEDF

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=716640 NRF19_RS15505 WP_103180881.1 2804355..2805413(+) (recA) [Leclercia adecarboxylata strain M17]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATCGAAAAGCAATTCGGTAAAGGTTCCAT
CATGCGCCTGGGTGAAGATCGTTCCATGGATGTAGAAACTATCTCCACCGGTTCGCTTTCTCTGGATATTGCACTGGGTG
CTGGCGGCCTGCCTATGGGTCGTATCGTAGAGATCTACGGGCCAGAATCCTCCGGTAAAACCACCCTGACCTTACAGGTT
GTGGCTGCTGCACAGCGCGAGGGCAAAACCTGTGCCTTTATCGATGCTGAGCACGCGCTGGATCCGGTTTACGCACGTAA
ACTGGGTGTTGATATCGACAACCTGCTCTGCTCCCAGCCGGATACCGGTGAGCAGGCGCTGGAAATCTGTGACGCACTGG
CGCGCTCTGGCGCAGTTGACGTAATCATCGTTGACTCCGTAGCAGCGCTGACGCCAAAAGCAGAAATCGAAGGCGAAATC
GGTGACTCTCACATGGGCCTCGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCCGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAGATTGGTGTGATGTTCGGTAACCCGGAAACCACCACCGGTGGTA
ACGCGCTGAAATTCTACGCTTCCGTGCGTCTGGATATCCGCCGTATCGGTGCCGTTAAAGACGGTGAAAACGTGGTGGGT
AGCGAAACCCGCGTGAAGGTTGTGAAGAACAAGATTGCTGCACCGTTCAAACAGGCTGAATTCCAGATCCTCTACGGCGA
AGGCATCAACTTCTACGGCGAACTGGTTGACCTGGGCGTGAAAGAGAAGCTGATTGAGAAAGCGGGCGCCTGGTACAGCT
ACAACGGCGACAAGATCGGTCAAGGTAAAGCGAATGCTATCTCCTGGCTGAAAGAGAACCCGGCGGCAGCGAAAGAGATT
GAGAAGAAGGTACGCGATCTGCTTCTCAATAATCAGGATGCTAAGCCTGACTTCACTGCGGATGACGCAGACGTAGAAGA
AACCAACGAAGATTTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

80.226

100

0.807
  recA Vibrio cholerae O1 biovar El Tor strain E7946

80.226

100

0.807
  recA Pseudomonas stutzeri DSM 10701

72.727

96.875

0.705
  recA Acinetobacter baylyi ADP1

70.487

99.148

0.699
  recA Glaesserella parasuis strain SC1401

69.516

99.716

0.693
  recA Acinetobacter baumannii D1279779

73.7

92.898

0.685
  recA Neisseria gonorrhoeae MS11

69.632

92.614

0.645
  recA Neisseria gonorrhoeae MS11

69.632

92.614

0.645
  recA Neisseria gonorrhoeae strain FA1090

69.632

92.614

0.645
  recA Ralstonia pseudosolanacearum GMI1000

70.418

88.352

0.622
  recA Streptococcus mitis SK321

59.259

99.716

0.591
  recA Helicobacter pylori strain NCTC11637

60.831

95.739

0.582
  recA Helicobacter pylori 26695

60.534

95.739

0.58
  recA Streptococcus pneumoniae Rx1

62.848

91.761

0.577
  recA Streptococcus pneumoniae TIGR4

62.848

91.761

0.577
  recA Streptococcus pneumoniae R6

62.848

91.761

0.577
  recA Streptococcus pneumoniae D39

62.848

91.761

0.577
  recA Streptococcus mitis NCTC 12261

62.539

91.761

0.574
  recA Streptococcus pyogenes NZ131

61.846

92.33

0.571
  recA Streptococcus mutans UA159

61.538

92.33

0.568
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.231

92.33

0.565
  recA Lactococcus lactis subsp. cremoris KW2

61.61

91.761

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

60.923

92.33

0.562
  recA Bacillus subtilis subsp. subtilis str. 168

61.682

91.193

0.562
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.459

94.602

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.429

92.614

0.56