Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NRZ32_RS15550 Genome accession   NZ_CP102368
Coordinates   3440809..3441873 (-) Length   354 a.a.
NCBI ID   WP_010636082.1    Uniprot ID   H9XWQ6
Organism   Aeromonas dhakensis strain BC18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3435809..3446873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRZ32_RS15535 (NRZ32_15535) - 3435973..3437220 (-) 1248 WP_005305167.1 aspartate kinase -
  NRZ32_RS15540 (NRZ32_15540) alaS 3437237..3439861 (-) 2625 WP_019838968.1 alanine--tRNA ligase -
  NRZ32_RS15545 (NRZ32_15545) - 3440258..3440767 (-) 510 WP_268038933.1 regulatory protein RecX -
  NRZ32_RS15550 (NRZ32_15550) recA 3440809..3441873 (-) 1065 WP_010636082.1 recombinase RecA Machinery gene
  NRZ32_RS15555 (NRZ32_15555) pncC 3441953..3442444 (-) 492 WP_065018769.1 nicotinamide-nucleotide amidase -
  NRZ32_RS15560 (NRZ32_15560) mutS 3442679..3445261 (+) 2583 WP_268037538.1 DNA mismatch repair protein MutS -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38040.61 Da        Isoelectric Point: 4.8988

>NTDB_id=716559 NRZ32_RS15550 WP_010636082.1 3440809..3441873(-) (recA) [Aeromonas dhakensis strain BC18]
MDQNKQKALAAALGQIEKQFGKGSIMRLGDSKTMDIEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIA
EAQKKGKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIEGEMGD
SHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE
TRVKVVKNKVAPPFKQAEFQIFYGAGISKEGELVDLGVKHKLIDKAGAWYSYNGEKIGQGKANVMKLFSENKALAGEVEA
KLRELLLSGAAPVEEKPSAAEYDEFEAENEQEFE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=716559 NRZ32_RS15550 WP_010636082.1 3440809..3441873(-) (recA) [Aeromonas dhakensis strain BC18]
ATGGATCAGAACAAACAGAAGGCACTGGCGGCTGCGCTGGGTCAGATTGAAAAGCAGTTCGGCAAAGGTTCCATCATGCG
TCTGGGCGACAGCAAGACCATGGATATTGAAGCCATCTCCACCGGCTCCCTCTCTCTGGACGTGGCGCTGGGGATCGGTG
GTCTGCCGTGCGGTCGTATCGTCGAGATCTACGGCCCGGAATCTTCCGGTAAAACCACGCTGACCCTGCAGGTGATCGCC
GAAGCCCAGAAGAAGGGCAAGACCTGTGCCTTCGTCGATGCGGAACACGCACTGGATCCCATCTATGCCGCCAAGCTGGG
CGTCAACGTCGACGACTTGCTCATCTCCCAGCCGGACACCGGTGAACAGGCGCTGGAGATCTGCGACATGCTGGTGCGCT
CCAATGCAGTTGACGTCATCATCGTCGACTCCGTGGCGGCCCTGACCCCGAAAGCGGAAATCGAAGGCGAGATGGGTGAC
TCCCACGTCGGCCTGCAGGCTCGTCTGATGTCCCAGGCGCTGCGCAAGCTGACCGCCAACATCAAGAACGCCAACTGTCT
GTGCATCTTCATCAACCAGATCCGGATGAAGATCGGTGTCATGTTCGGCAGCCCGGAGACCACTACCGGTGGTAACGCGC
TCAAGTTCTACGCCTCTGTGCGTCTGGATATCCGTCGTACCGGCGCCATCAAGGAAGGTGACGAAGTGGTCGGTAACGAG
ACCCGCGTCAAGGTAGTGAAGAACAAGGTGGCTCCGCCCTTCAAGCAGGCCGAATTCCAGATCTTCTACGGTGCTGGTAT
CTCCAAAGAGGGCGAGCTGGTGGATCTCGGCGTCAAGCACAAGCTGATCGACAAGGCCGGTGCCTGGTACAGCTACAACG
GCGAGAAGATCGGTCAGGGCAAGGCCAACGTGATGAAGCTCTTCTCCGAAAACAAGGCGCTGGCTGGCGAAGTGGAAGCC
AAACTGCGCGAGCTGCTGCTCTCCGGCGCCGCGCCGGTGGAGGAGAAGCCCTCCGCTGCCGAGTACGACGAGTTTGAAGC
CGAAAACGAACAAGAGTTCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB H9XWQ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

75.921

99.718

0.757
  recA Vibrio cholerae O1 biovar El Tor strain E7946

75.921

99.718

0.757
  recA Pseudomonas stutzeri DSM 10701

78.171

95.763

0.749
  recA Acinetobacter baylyi ADP1

71.264

98.305

0.701
  recA Acinetobacter baumannii D1279779

72.647

96.045

0.698
  recA Glaesserella parasuis strain SC1401

69.886

99.435

0.695
  recA Neisseria gonorrhoeae MS11

68.555

99.718

0.684
  recA Neisseria gonorrhoeae MS11

68.555

99.718

0.684
  recA Neisseria gonorrhoeae strain FA1090

68.555

99.718

0.684
  recA Ralstonia pseudosolanacearum GMI1000

72.948

92.938

0.678
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.96

98.023

0.607
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.35

93.503

0.602
  recA Helicobacter pylori strain NCTC11637

62.353

96.045

0.599
  recA Helicobacter pylori 26695

61.765

96.045

0.593
  recA Bacillus subtilis subsp. subtilis str. 168

63.24

90.678

0.573
  recA Latilactobacillus sakei subsp. sakei 23K

60.18

94.35

0.568
  recA Streptococcus mutans UA159

58.772

96.61

0.568
  recA Streptococcus pneumoniae D39

61.3

91.243

0.559
  recA Streptococcus pneumoniae R6

61.3

91.243

0.559
  recA Streptococcus pneumoniae TIGR4

61.3

91.243

0.559
  recA Streptococcus pneumoniae Rx1

61.3

91.243

0.559
  recA Streptococcus mitis SK321

60.991

91.243

0.556
  recA Streptococcus mitis NCTC 12261

60.991

91.243

0.556
  recA Streptococcus pyogenes NZ131

60.681

91.243

0.554
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.146

92.655

0.548
  recA Lactococcus lactis subsp. cremoris KW2

58.204

91.243

0.531