Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GB880_RS01710 Genome accession   NZ_CP102355
Coordinates   340183..341253 (-) Length   356 a.a.
NCBI ID   WP_154490823.1    Uniprot ID   A0A7X2TH89
Organism   Paracoccus sp. SMMA_5_TC     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 335183..346253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GB880_RS01690 (GB880_001690) - 335900..336118 (+) 219 WP_154490835.1 hypothetical protein -
  GB880_RS01695 (GB880_001695) - 336159..336953 (-) 795 WP_154490832.1 class II glutamine amidotransferase -
  GB880_RS01700 (GB880_001700) - 337007..337309 (-) 303 WP_154490829.1 DUF1330 domain-containing protein -
  GB880_RS01705 (GB880_001705) alaS 337306..339963 (-) 2658 WP_154490826.1 alanine--tRNA ligase -
  GB880_RS01710 (GB880_001710) recA 340183..341253 (-) 1071 WP_154490823.1 recombinase RecA Machinery gene
  GB880_RS01715 (GB880_001715) - 341498..342082 (+) 585 WP_154490820.1 hypothetical protein -
  GB880_RS01720 (GB880_001720) - 342070..344148 (-) 2079 WP_154550481.1 ATP-binding protein -
  GB880_RS01725 (GB880_001725) - 344207..345358 (-) 1152 WP_154490814.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  GB880_RS01730 (GB880_001730) - 345424..346224 (-) 801 WP_229774282.1 hypothetical protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38302.54 Da        Isoelectric Point: 4.8123

>NTDB_id=716385 GB880_RS01710 WP_154490823.1 340183..341253(-) (recA) [Paracoccus sp. SMMA_5_TC]
MAGATLFDMNDKRTADKQKALDSALAQIERQFGKGSIMKLGADNPVAEIEATSTGSLGLDIALGIGGLPKGRIIEIFGPE
SSGKTTLTLHVVAEEQKKGGVCAFVDAEHALDPQYAKKLGVNLDELLISQPDTGEQALEIVDTLVRSGAVNLVVVDSVAA
LTPKSEIEGDMGDMQMGSQARLMSQAMRKLTASIGRSNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRT
GSIKDRDEVVGNTTRVKVVKNKVAPPFRQVEFDIMYGEGISKVGELIDLGIKAGVVEKSGSWYSYGDERIGQGRENAKQF
LRDNPEIAYAIEDRIRASHGLDFGATDEGDDAVTED

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=716385 GB880_RS01710 WP_154490823.1 340183..341253(-) (recA) [Paracoccus sp. SMMA_5_TC]
ATGGCAGGGGCGACACTTTTCGACATGAACGACAAGCGGACAGCAGACAAGCAGAAGGCGCTGGACAGCGCCCTGGCGCA
GATCGAACGTCAGTTCGGCAAGGGCTCGATCATGAAACTGGGCGCTGACAACCCGGTGGCCGAGATCGAGGCAACTTCGA
CCGGTTCGCTGGGCCTCGACATCGCGCTGGGCATCGGCGGCCTGCCCAAGGGGCGCATCATCGAGATTTTCGGTCCGGAA
AGTTCGGGCAAGACCACGCTGACCCTGCATGTGGTCGCCGAAGAACAGAAAAAGGGGGGTGTCTGCGCCTTTGTCGACGC
CGAACACGCGCTGGACCCGCAATATGCCAAGAAACTGGGCGTCAATCTGGACGAGCTGCTGATCAGCCAGCCCGATACAG
GTGAACAGGCGCTGGAGATTGTCGATACTCTGGTGCGCTCGGGCGCGGTCAATCTGGTGGTGGTCGATTCGGTGGCGGCG
CTGACGCCCAAATCCGAGATCGAAGGTGACATGGGCGACATGCAGATGGGCAGTCAGGCCCGGCTGATGAGCCAGGCGAT
GCGCAAGCTGACCGCCAGCATCGGGCGCAGCAACTGCATGGTGATCTTCATCAACCAGATCCGGATGAAGATCGGGGTGA
TGTTCGGCAACCCCGAGACGACGACAGGTGGCAATGCGCTGAAATTCTATGCCTCGGTGCGCCTGGACATCCGCCGGACC
GGGTCGATCAAGGACCGCGATGAGGTGGTGGGCAATACCACCCGCGTCAAGGTCGTCAAGAACAAGGTAGCGCCACCTTT
CCGGCAGGTGGAATTCGACATCATGTATGGCGAAGGCATCTCGAAGGTGGGGGAGCTCATCGATCTTGGCATCAAGGCGG
GCGTGGTCGAGAAATCGGGCAGCTGGTATTCCTATGGCGACGAGCGCATCGGCCAGGGACGCGAGAACGCCAAGCAGTTC
CTGCGCGACAACCCCGAAATCGCCTATGCCATCGAGGACAGGATCCGCGCCAGCCATGGCCTGGATTTCGGCGCGACCGA
TGAAGGCGACGATGCGGTGACCGAGGATTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X2TH89

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

67.63

97.191

0.657
  recA Neisseria gonorrhoeae MS11

68.732

95.225

0.654
  recA Neisseria gonorrhoeae strain FA1090

68.732

95.225

0.654
  recA Neisseria gonorrhoeae MS11

68.732

95.225

0.654
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.34

90.169

0.643
  recA Vibrio cholerae strain A1552

71.34

90.169

0.643
  recA Ralstonia pseudosolanacearum GMI1000

72.93

88.202

0.643
  recA Pseudomonas stutzeri DSM 10701

70.807

90.449

0.64
  recA Bacillus subtilis subsp. subtilis str. 168

67.683

92.135

0.624
  recA Acinetobacter baylyi ADP1

68.847

90.169

0.621
  recA Acinetobacter baumannii D1279779

68.847

90.169

0.621
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.073

92.135

0.618
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.644

91.573

0.601
  recA Helicobacter pylori 26695

65.337

91.573

0.598
  recA Helicobacter pylori strain NCTC11637

65.337

91.573

0.598
  recA Streptococcus mitis NCTC 12261

61.471

95.506

0.587
  recA Streptococcus pneumoniae R6

61.176

95.506

0.584
  recA Streptococcus mitis SK321

61.176

95.506

0.584
  recA Streptococcus pneumoniae TIGR4

61.176

95.506

0.584
  recA Streptococcus pneumoniae Rx1

61.176

95.506

0.584
  recA Streptococcus pneumoniae D39

61.176

95.506

0.584
  recA Latilactobacillus sakei subsp. sakei 23K

58.944

95.787

0.565
  recA Streptococcus mutans UA159

60.606

92.697

0.562
  recA Streptococcus pyogenes NZ131

60.182

92.416

0.556
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.494

91.011

0.551
  recA Lactococcus lactis subsp. cremoris KW2

57.988

94.944

0.551