Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NQ490_RS03900 Genome accession   NZ_CP102293
Coordinates   764098..765276 (-) Length   392 a.a.
NCBI ID   WP_007047543.1    Uniprot ID   -
Organism   Subdoligranulum variabile strain DSM 15176     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 759098..770276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQ490_RS03880 (NQ490_03880) - 759536..761482 (-) 1947 WP_147644693.1 hypothetical protein -
  NQ490_RS03885 (NQ490_03885) pgsA 761501..762076 (-) 576 WP_007047540.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NQ490_RS03890 (NQ490_03890) rimO 762080..763420 (-) 1341 WP_007047541.1 30S ribosomal protein S12 methylthiotransferase RimO -
  NQ490_RS03895 (NQ490_03895) - 763478..764098 (-) 621 WP_007047542.1 regulatory protein RecX -
  NQ490_RS03900 (NQ490_03900) recA 764098..765276 (-) 1179 WP_007047543.1 recombinase RecA Machinery gene
  NQ490_RS03905 (NQ490_03905) prmC 765398..766228 (-) 831 WP_007047544.1 peptide chain release factor N(5)-glutamine methyltransferase -
  NQ490_RS03910 (NQ490_03910) - 766225..767151 (-) 927 WP_007047545.1 DUF1385 domain-containing protein -
  NQ490_RS03915 (NQ490_03915) - 767174..768622 (-) 1449 WP_007047546.1 HAMP domain-containing sensor histidine kinase -
  NQ490_RS03920 (NQ490_03920) - 768673..769374 (-) 702 WP_007047547.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 392 a.a.        Molecular weight: 41423.64 Da        Isoelectric Point: 5.3760

>NTDB_id=715974 NQ490_RS03900 WP_007047543.1 764098..765276(-) (recA) [Subdoligranulum variabile strain DSM 15176]
MAAKKDTTPKSSGPATDKKAALETALAQIEKQFGKGAVMKLGANVTMQVDAIPTGSLGLDLALGIGGLPRGRIIEIYGPE
SSGKTTLALQVLAEAQKMGGEVAFIDVEHALDPAYASALGVDIDSLLVSQPDTGEQAMEICEALVRSGAIDAVVVDSVAA
MVPRAEIEGEMGDSHVGLQARLMSQALRKLTGVIGKTNTVCIFINQLREKVGIVYGNPEVTTGGRALKYYSSVRIDVRRI
EGLKDSTGAFIGNRTRAKIVKNKVAPPFREAEFDIMFGEGISKIGEILDLGVKLGIVQKSGAWFNYGEMRLGQGRDNAKQ
FLKEHPEVSDEIEKIVRANADRLLAAGKKGTVKPLDPSELVKPVTAAEAPAASAPAAKTTGSEVDLDIMVDE

Nucleotide


Download         Length: 1179 bp        

>NTDB_id=715974 NQ490_RS03900 WP_007047543.1 764098..765276(-) (recA) [Subdoligranulum variabile strain DSM 15176]
ATGGCAGCTAAAAAAGATACAACCCCTAAGAGCAGCGGTCCGGCCACCGACAAGAAGGCCGCGCTGGAGACCGCCCTGGC
TCAGATCGAAAAGCAGTTCGGCAAGGGCGCCGTCATGAAGCTGGGCGCCAATGTCACCATGCAGGTGGATGCGATCCCCA
CCGGAAGCCTGGGCCTGGACCTGGCCCTGGGCATTGGCGGTCTGCCCCGCGGCCGTATCATCGAGATCTATGGACCGGAA
TCTTCCGGTAAGACGACGCTGGCCCTCCAGGTGCTGGCGGAAGCCCAGAAGATGGGCGGCGAAGTGGCTTTCATCGACGT
GGAGCACGCCCTGGACCCGGCTTACGCCAGCGCACTGGGCGTGGACATTGACAGCCTGCTGGTCAGCCAGCCCGACACCG
GCGAGCAGGCCATGGAGATCTGCGAAGCGCTGGTGCGTTCCGGCGCCATCGACGCTGTGGTCGTGGACTCTGTGGCAGCC
ATGGTGCCCCGGGCCGAAATCGAGGGTGAGATGGGCGACAGCCATGTGGGTCTGCAGGCCCGTCTGATGAGCCAGGCGCT
GCGCAAGCTTACCGGCGTCATCGGCAAGACCAACACCGTCTGTATCTTCATCAACCAGCTGCGTGAGAAGGTGGGTATTG
TCTATGGCAACCCCGAAGTCACCACCGGCGGCCGCGCGCTGAAGTACTATTCCAGTGTGCGGATCGATGTGCGCCGCATT
GAAGGCCTGAAGGATTCCACCGGCGCCTTCATCGGCAACCGTACCCGCGCCAAGATCGTCAAGAACAAGGTGGCACCGCC
CTTCCGTGAGGCGGAGTTCGACATCATGTTCGGCGAGGGCATCTCCAAGATCGGCGAGATCCTGGATCTGGGCGTCAAGC
TGGGCATCGTCCAGAAGAGCGGCGCCTGGTTCAACTACGGCGAGATGCGCCTGGGCCAGGGCCGCGACAACGCCAAGCAG
TTCCTGAAGGAGCACCCCGAGGTCTCCGACGAGATCGAGAAGATCGTCCGCGCCAATGCCGACCGTTTGCTGGCGGCCGG
CAAGAAGGGCACCGTCAAGCCGCTGGATCCCAGTGAGCTGGTCAAGCCGGTGACGGCGGCCGAAGCACCTGCTGCGTCCG
CCCCGGCTGCCAAGACCACCGGCAGCGAAGTGGATCTCGACATTATGGTTGACGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

68.21

82.653

0.564
  recA Helicobacter pylori strain NCTC11637

68.454

80.867

0.554
  recA Helicobacter pylori 26695

68.139

80.867

0.551
  recA Neisseria gonorrhoeae MS11

64.923

82.908

0.538
  recA Neisseria gonorrhoeae strain FA1090

64.923

82.908

0.538
  recA Neisseria gonorrhoeae MS11

64.923

82.908

0.538
  recA Glaesserella parasuis strain SC1401

62.202

85.714

0.533
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.596

82.143

0.531
  recA Latilactobacillus sakei subsp. sakei 23K

64.596

82.143

0.531
  recA Lactococcus lactis subsp. cremoris KW2

60

88.01

0.528
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.588

86.735

0.526
  recA Pseudomonas stutzeri DSM 10701

63.665

82.143

0.523
  recA Streptococcus mitis SK321

60.534

85.969

0.52
  recA Streptococcus mitis NCTC 12261

60.534

85.969

0.52
  recA Acinetobacter baumannii D1279779

59.475

87.5

0.52
  recA Streptococcus mutans UA159

62.346

82.653

0.515
  recA Streptococcus pneumoniae D39

62.154

82.908

0.515
  recA Streptococcus pneumoniae TIGR4

62.154

82.908

0.515
  recA Streptococcus pneumoniae R6

62.154

82.908

0.515
  recA Streptococcus pneumoniae Rx1

62.154

82.908

0.515
  recA Acinetobacter baylyi ADP1

62.617

81.888

0.513
  recA Streptococcus pyogenes NZ131

62.037

82.653

0.513
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.593

89.031

0.513
  recA Ralstonia pseudosolanacearum GMI1000

64.309

79.337

0.51
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.682

81.888

0.505
  recA Vibrio cholerae strain A1552

61.682

81.888

0.505