Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NQ541_RS07300 Genome accession   NZ_CP102292
Coordinates   1545567..1546688 (-) Length   373 a.a.
NCBI ID   WP_005609198.1    Uniprot ID   V8BPP5
Organism   [Ruminococcus] lactaris ATCC 29176     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1540567..1551688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQ541_RS07275 (NQ541_07275) - 1540676..1542079 (+) 1404 WP_005609204.1 oligosaccharide flippase family protein -
  NQ541_RS07280 (NQ541_07280) - 1542024..1542563 (-) 540 WP_023922950.1 hypothetical protein -
  NQ541_RS07285 (NQ541_07285) - 1542633..1543172 (-) 540 WP_023922949.1 NUDIX hydrolase -
  NQ541_RS07290 (NQ541_07290) rny 1543316..1544875 (-) 1560 WP_005609201.1 ribonuclease Y -
  NQ541_RS07295 (NQ541_07295) - 1544956..1545570 (-) 615 WP_005609199.1 regulatory protein RecX -
  NQ541_RS07300 (NQ541_07300) recA 1545567..1546688 (-) 1122 WP_005609198.1 recombinase RecA Machinery gene
  NQ541_RS07305 (NQ541_07305) - 1546990..1547628 (-) 639 WP_005609195.1 histidine phosphatase family protein -
  NQ541_RS07310 (NQ541_07310) - 1547631..1548179 (-) 549 WP_005609194.1 DUF5662 family protein -
  NQ541_RS07315 (NQ541_07315) - 1548139..1549962 (-) 1824 WP_005609193.1 hypothetical protein -
  NQ541_RS07320 (NQ541_07320) - 1549977..1550960 (-) 984 WP_226978720.1 substrate-binding domain-containing protein -
  NQ541_RS07325 (NQ541_07325) - 1551173..1551475 (+) 303 WP_005609186.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 373 a.a.        Molecular weight: 40592.42 Da        Isoelectric Point: 5.5793

>NTDB_id=715966 NQ541_RS07300 WP_005609198.1 1545567..1546688(-) (recA) [[Ruminococcus] lactaris ATCC 29176]
MASGKESVVKVTNSEEKKKALDAAIAKLEKDFGKGAVMKLGESGAHVSVETVPTGCLSLDLALGLGGVPKGRVIEVYGPE
SSGKTTVALHMISEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDELYISQPDSGDQALEIAETMVRSGAIDIIVIDSVAA
LVPKQEIEGDMGDSHVGLQARLMSQALRKLTPVISKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYASVRMDVRRI
ETLKQNGEIVGNRTRIKIVKNKIAPPFKEAEFDIMFGKGISREGDILDLASKIDIVKKSGAWYAYEGDKIGQGRENAKSY
LESHPEVMEEIERKVRAYYHLDGTEPEDEKKSDLKLTAEKKTDKEKTDAEQAE

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=715966 NQ541_RS07300 WP_005609198.1 1545567..1546688(-) (recA) [[Ruminococcus] lactaris ATCC 29176]
ATGGCAAGTGGAAAAGAAAGCGTTGTAAAAGTTACAAATAGTGAAGAAAAGAAAAAAGCCCTGGATGCGGCGATCGCCAA
ACTGGAGAAGGACTTCGGTAAGGGTGCAGTGATGAAGCTGGGAGAGTCAGGGGCACATGTGTCAGTAGAGACGGTTCCGA
CTGGATGCCTGAGTCTGGATCTTGCACTGGGACTGGGGGGAGTGCCAAAAGGAAGAGTGATCGAGGTTTATGGTCCTGAG
TCCAGTGGTAAGACGACGGTTGCATTGCATATGATCTCAGAAGTGCAGAAACGTGGCGGAATTGCAGGCTTTATAGATGC
AGAGCATGCATTGGATCCGGTTTATGCAAAGAATATCGGAGTGGATATTGATGAATTATATATTTCGCAGCCGGACAGCG
GAGATCAGGCACTTGAGATTGCGGAGACGATGGTGCGTTCCGGTGCGATTGATATTATCGTTATTGACTCTGTTGCGGCA
CTTGTTCCAAAGCAGGAGATTGAAGGAGATATGGGAGACAGCCATGTAGGACTGCAGGCAAGACTGATGTCCCAGGCTTT
GAGAAAACTGACACCGGTGATCAGCAAATCGAACTGTGTGGTTATTTTTATCAATCAGCTCCGTGAGAAAGTGGGAGTGA
TGTTTGGTAATCCGGAGACGACTACCGGAGGACGTGCGTTGAAGTTTTATGCCTCTGTCCGTATGGATGTAAGAAGAATC
GAGACTCTGAAGCAGAATGGTGAGATCGTAGGAAACCGTACAAGGATCAAGATTGTAAAGAATAAGATTGCACCTCCGTT
TAAAGAGGCAGAATTTGATATTATGTTCGGAAAAGGAATTTCAAGAGAAGGAGATATCCTGGATCTTGCGTCAAAGATTG
ATATTGTAAAGAAGAGCGGTGCATGGTATGCATACGAGGGTGATAAGATCGGACAGGGACGTGAAAATGCAAAGTCCTAT
CTGGAGTCACATCCGGAAGTGATGGAAGAGATTGAAAGAAAAGTACGTGCTTATTATCATCTGGATGGTACAGAGCCGGA
AGATGAAAAGAAAAGTGATCTGAAGCTGACTGCAGAGAAGAAGACAGATAAAGAAAAGACTGATGCGGAGCAGGCAGAAT
GA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V8BPP5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

66.667

87.668

0.584
  recA Acinetobacter baumannii D1279779

62.139

92.761

0.576
  recA Streptococcus pneumoniae R6

62.139

92.761

0.576
  recA Streptococcus pneumoniae Rx1

62.139

92.761

0.576
  recA Streptococcus pneumoniae D39

62.139

92.761

0.576
  recA Streptococcus pneumoniae TIGR4

62.139

92.761

0.576
  recA Streptococcus mitis SK321

62.209

92.225

0.574
  recA Streptococcus mitis NCTC 12261

62.099

91.957

0.571
  recA Streptococcus mutans UA159

60.169

94.906

0.571
  recA Streptococcus pyogenes NZ131

63.526

88.204

0.56
  recA Latilactobacillus sakei subsp. sakei 23K

61.976

89.544

0.555
  recA Lactococcus lactis subsp. cremoris KW2

62.727

88.472

0.555
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.424

88.472

0.552
  recA Glaesserella parasuis strain SC1401

61.194

89.812

0.55
  recA Neisseria gonorrhoeae MS11

61.446

89.008

0.547
  recA Neisseria gonorrhoeae strain FA1090

61.446

89.008

0.547
  recA Neisseria gonorrhoeae MS11

61.446

89.008

0.547
  recA Helicobacter pylori strain NCTC11637

62.539

86.595

0.542
  recA Helicobacter pylori 26695

62.539

86.595

0.542
  recA Vibrio cholerae strain A1552

62.733

86.327

0.542
  recA Acinetobacter baylyi ADP1

62.733

86.327

0.542
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.733

86.327

0.542
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.585

87.936

0.542
  recA Pseudomonas stutzeri DSM 10701

61.61

86.595

0.534
  recA Ralstonia pseudosolanacearum GMI1000

62.701

83.378

0.523
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.716

87.668

0.515