Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NQ502_RS02035 Genome accession   NZ_CP102290
Coordinates   421566..422618 (-) Length   350 a.a.
NCBI ID   WP_044983107.1    Uniprot ID   -
Organism   Ruminococcus gauvreauii strain DSM 19829     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 416566..427618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQ502_RS02000 (NQ502_02000) - 416609..416854 (-) 246 WP_044983125.1 HPr family phosphocarrier protein -
  NQ502_RS02005 (NQ502_02005) - 417032..417661 (+) 630 WP_028528091.1 DNA-3-methyladenine glycosylase -
  NQ502_RS02010 (NQ502_02010) - 417748..417942 (-) 195 WP_327240967.1 helix-turn-helix transcriptional regulator -
  NQ502_RS02015 (NQ502_02015) - 418076..418309 (+) 234 WP_028528090.1 hypothetical protein -
  NQ502_RS02020 (NQ502_02020) - 418534..418944 (-) 411 WP_028528089.1 hypothetical protein -
  NQ502_RS02025 (NQ502_02025) rny 419290..420849 (-) 1560 WP_044983108.1 ribonuclease Y -
  NQ502_RS02030 (NQ502_02030) - 420940..421569 (-) 630 WP_028528087.1 regulatory protein RecX -
  NQ502_RS02035 (NQ502_02035) recA 421566..422618 (-) 1053 WP_044983107.1 recombinase RecA Machinery gene
  NQ502_RS02040 (NQ502_02040) - 422621..422893 (-) 273 WP_028528085.1 hypothetical protein -
  NQ502_RS02045 (NQ502_02045) glgA 422862..424304 (-) 1443 WP_028528084.1 glycogen synthase GlgA -
  NQ502_RS02050 (NQ502_02050) spo0A 424471..425268 (-) 798 WP_028528083.1 sporulation transcription factor Spo0A -
  NQ502_RS02055 (NQ502_02055) spoIVB 425513..426715 (-) 1203 WP_028528082.1 SpoIVB peptidase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37784.34 Da        Isoelectric Point: 5.3460

>NTDB_id=715933 NQ502_RS02035 WP_044983107.1 421566..422618(-) (recA) [Ruminococcus gauvreauii strain DSM 19829]
MVKEDKLKALDAALVQIEKNYGKGAVMKLGDSGINMNVETIPTGSLSLDVALGLGGIPKGRVVEIYGPESSGKTTVALHM
VAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDNLYISQPDSGEQALEITETMVRSGAVDIVIVDSVAALVPRAEIDGEM
GDSHVGLQARLMSQALRKLTSVIGKSGCVVIFINQLREKVGVMYGSPEVTTGGRALKFYSSIRMDVRRIEAIKQSGEVIG
NRTRIKVVKNKIAPPFKEAEFDIMFGKGISREADILELAASSGVIQKSGAWFAYDNAKIGQGRENAKTYLMEHPEVMQEV
EQKVRAYYGLNGAEKSETPQEPKTAEIETE

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=715933 NQ502_RS02035 WP_044983107.1 421566..422618(-) (recA) [Ruminococcus gauvreauii strain DSM 19829]
ATGGTAAAGGAAGATAAATTAAAAGCATTGGACGCGGCACTCGTACAGATAGAAAAAAACTACGGAAAAGGTGCAGTGAT
GAAACTGGGGGATTCAGGCATCAACATGAATGTGGAGACGATACCGACAGGATCCCTGAGCCTCGATGTGGCACTGGGGC
TGGGCGGCATACCAAAGGGGCGCGTGGTGGAGATCTACGGACCGGAATCGAGCGGTAAGACTACCGTGGCACTCCATATG
GTAGCGGAGGTACAAAAGAGAGGCGGGATCGCAGGATTTATCGATGCAGAGCATGCGCTTGATCCAGTATATGCAAAAAA
TATTGGCGTTGATATCGACAATCTTTATATCTCACAGCCGGACAGCGGTGAGCAGGCACTTGAGATCACAGAGACGATGG
TGCGTTCAGGAGCGGTAGATATTGTGATCGTGGATTCTGTCGCGGCTCTTGTTCCGAGAGCTGAGATTGACGGTGAGATG
GGAGATTCTCATGTTGGTCTTCAGGCCCGTCTCATGTCACAGGCGCTCAGAAAATTAACTTCCGTGATCGGAAAATCAGG
CTGTGTTGTTATTTTTATCAATCAGCTGCGTGAGAAGGTAGGGGTGATGTACGGCAGTCCGGAAGTCACCACGGGCGGAC
GTGCGCTGAAGTTTTACTCATCCATCCGTATGGATGTGCGCCGGATAGAGGCGATTAAGCAGAGCGGTGAGGTCATCGGA
AACCGTACACGTATCAAAGTTGTGAAGAATAAAATTGCACCGCCGTTTAAGGAGGCGGAATTTGACATTATGTTTGGAAA
GGGGATTTCCAGAGAGGCGGATATCCTGGAGCTGGCTGCAAGCAGCGGTGTGATTCAGAAGAGCGGGGCATGGTTTGCCT
ACGACAATGCGAAGATTGGACAGGGGCGTGAAAACGCGAAGACATATCTGATGGAGCATCCGGAGGTCATGCAGGAGGTG
GAGCAGAAGGTAAGAGCGTACTACGGCCTGAATGGCGCAGAGAAGTCAGAGACACCTCAGGAGCCGAAAACAGCGGAGAT
TGAGACAGAATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

61.032

99.714

0.609
  recA Latilactobacillus sakei subsp. sakei 23K

62.832

96.857

0.609
  recA Streptococcus pneumoniae TIGR4

60.92

99.429

0.606
  recA Streptococcus pneumoniae Rx1

60.92

99.429

0.606
  recA Streptococcus pneumoniae R6

60.92

99.429

0.606
  recA Streptococcus pneumoniae D39

60.92

99.429

0.606
  recA Lactococcus lactis subsp. cremoris KW2

64.526

93.429

0.603
  recA Bacillus subtilis subsp. subtilis str. 168

63.914

93.429

0.597
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.303

93.429

0.591
  recA Pseudomonas stutzeri DSM 10701

61.607

96

0.591
  recA Streptococcus pyogenes NZ131

62.727

94.286

0.591
  recA Neisseria gonorrhoeae strain FA1090

61.862

95.143

0.589
  recA Neisseria gonorrhoeae MS11

61.862

95.143

0.589
  recA Neisseria gonorrhoeae MS11

61.862

95.143

0.589
  recA Helicobacter pylori strain NCTC11637

59.942

97.714

0.586
  recA Streptococcus mitis SK321

59.249

98.857

0.586
  recA Streptococcus mitis NCTC 12261

58.96

98.857

0.583
  recA Helicobacter pylori 26695

59.649

97.714

0.583
  recA Acinetobacter baylyi ADP1

58.213

99.143

0.577
  recA Acinetobacter baumannii D1279779

59.064

97.714

0.577
  recA Glaesserella parasuis strain SC1401

61.585

93.714

0.577
  recA Vibrio cholerae strain A1552

62.112

92

0.571
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.112

92

0.571
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.337

94.857

0.563
  recA Ralstonia pseudosolanacearum GMI1000

61.587

90

0.554
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.333

92.571

0.54