Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NQ544_RS10205 Genome accession   NZ_CP102288
Coordinates   2397935..2398966 (+) Length   343 a.a.
NCBI ID   WP_006848471.1    Uniprot ID   A0A6I2U0S0
Organism   Segatella copri DSM 18205     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2392935..2403966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQ544_RS10180 (NQ544_10180) - 2393726..2394199 (-) 474 WP_006848465.1 lipocalin family protein -
  NQ544_RS10185 (NQ544_10185) - 2394595..2395218 (-) 624 WP_006848467.1 VWA domain-containing protein -
  NQ544_RS10190 (NQ544_10190) crcB 2395423..2395803 (+) 381 WP_006848468.1 fluoride efflux transporter CrcB -
  NQ544_RS10195 (NQ544_10195) - 2396027..2396635 (+) 609 WP_022120293.1 DUF6621 family protein -
  NQ544_RS10200 (NQ544_10200) - 2396674..2397915 (+) 1242 WP_006848470.1 saccharopine dehydrogenase family protein -
  NQ544_RS10205 (NQ544_10205) recA 2397935..2398966 (+) 1032 WP_006848471.1 recombinase RecA Machinery gene
  NQ544_RS10210 (NQ544_10210) dnaK 2399297..2401234 (+) 1938 WP_006848473.1 molecular chaperone DnaK -
  NQ544_RS10215 (NQ544_10215) - 2401435..2402289 (+) 855 WP_006848474.1 HAD family hydrolase -
  NQ544_RS10220 (NQ544_10220) - 2402445..2402804 (+) 360 WP_006848475.1 hypothetical protein -
  NQ544_RS10225 (NQ544_10225) - 2402897..2403646 (+) 750 WP_155814070.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 36678.04 Da        Isoelectric Point: 5.3334

>NTDB_id=715911 NQ544_RS10205 WP_006848471.1 2397935..2398966(+) (recA) [Segatella copri DSM 18205]
MAKEMQEGKLNPNEGKLKALQAAMAKIEKDFGKGSIMKLGDEHVENIEVIPTGSIALDNALGVGGYPKGRIIEIYGPESS
GKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLWISQPDNGEQALQIADQLISSAAVDIVVVDSVAALT
PKKEIEGDMGDNVVGLQARLMSQALRKLTSTISKTNTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRKATA
IKDGDEVIGNLVRVKVVKNKVAPPFRKAEFDIMFGEGISRAGEVFGLAVANDIIEKSGSWYSYGGSKLGQGADACKALLK
DNPELLDELEAKVREALAAKEQK

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=715911 NQ544_RS10205 WP_006848471.1 2397935..2398966(+) (recA) [Segatella copri DSM 18205]
ATGGCAAAAGAAATGCAAGAGGGAAAATTGAATCCCAATGAAGGCAAGCTGAAAGCTCTTCAGGCAGCCATGGCTAAGAT
AGAAAAGGACTTCGGTAAGGGCTCTATCATGAAACTCGGCGATGAGCACGTTGAGAACATCGAAGTTATCCCTACAGGCA
GTATCGCTCTCGACAATGCACTGGGCGTAGGCGGTTATCCTAAGGGACGTATCATCGAGATTTACGGTCCGGAATCTTCC
GGTAAAACAACATTGGCTATCCACGCCATCGCAGAGGCGCAGAAGGCTGGCGGTATCGCTGCTTTCATTGATGCAGAGCA
CGCTTTCGACCGTTTCTATGCGGCTAAATTGGGCGTTGATGTTGATAACTTGTGGATTTCACAACCAGATAATGGTGAGC
AGGCGTTGCAGATTGCAGACCAGCTGATCAGTTCTGCTGCTGTAGACATCGTAGTTGTTGACTCTGTTGCCGCCTTGACT
CCTAAAAAGGAAATCGAAGGCGATATGGGTGACAATGTGGTAGGTCTTCAGGCTCGATTGATGAGTCAGGCTCTCCGCAA
GCTCACTTCTACCATCAGCAAGACCAACACTACCTGCATCTTCATCAACCAGTTGCGCGAGAAGATTGGTGTAATGTTCG
GTAACCCAGAGACAACCACCGGTGGTAATGCTCTGAAGTTCTATGCATCAGTGCGTTTGGATATCCGCAAGGCTACAGCC
ATCAAGGACGGCGATGAGGTAATAGGTAATCTGGTTCGCGTAAAGGTGGTAAAGAACAAGGTGGCTCCTCCTTTCCGCAA
GGCAGAGTTCGACATCATGTTTGGCGAAGGCATCAGCCGTGCCGGCGAGGTATTCGGTCTGGCTGTAGCCAACGATATCA
TCGAAAAGAGCGGCAGCTGGTATAGCTATGGCGGTTCTAAACTCGGACAGGGTGCCGATGCCTGCAAGGCTTTGCTCAAG
GATAACCCTGAACTTCTCGATGAACTGGAAGCTAAGGTTCGCGAAGCACTTGCTGCTAAGGAACAGAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I2U0S0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

71.131

97.959

0.697
  recA Neisseria gonorrhoeae MS11

68.438

93.294

0.638
  recA Neisseria gonorrhoeae MS11

68.438

93.294

0.638
  recA Neisseria gonorrhoeae strain FA1090

68.438

93.294

0.638
  recA Glaesserella parasuis strain SC1401

66.258

95.044

0.63
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.031

95.044

0.618
  recA Ralstonia pseudosolanacearum GMI1000

67.524

90.671

0.612
  recA Vibrio cholerae strain A1552

63.333

96.21

0.609
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.333

96.21

0.609
  recA Helicobacter pylori strain NCTC11637

62.84

96.501

0.606
  recA Streptococcus pyogenes NZ131

64.087

94.169

0.604
  recA Helicobacter pylori 26695

62.538

96.501

0.604
  recA Streptococcus mitis NCTC 12261

64.486

93.586

0.603
  recA Acinetobacter baylyi ADP1

62.805

95.627

0.601
  recA Latilactobacillus sakei subsp. sakei 23K

64.78

92.711

0.601
  recA Bacillus subtilis subsp. subtilis str. 168

64.984

92.42

0.601
  recA Streptococcus pneumoniae D39

64.174

93.586

0.601
  recA Streptococcus pneumoniae TIGR4

64.174

93.586

0.601
  recA Streptococcus mitis SK321

64.174

93.586

0.601
  recA Streptococcus pneumoniae Rx1

64.174

93.586

0.601
  recA Streptococcus pneumoniae R6

64.174

93.586

0.601
  recA Pseudomonas stutzeri DSM 10701

63.077

94.752

0.598
  recA Lactococcus lactis subsp. cremoris KW2

63.158

94.169

0.595
  recA Acinetobacter baumannii D1279779

62.462

94.752

0.592
  recA Streptococcus mutans UA159

63.24

93.586

0.592
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.681

94.169

0.571