Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NQ536_RS06050 Genome accession   NZ_CP102278
Coordinates   1416762..1417826 (+) Length   354 a.a.
NCBI ID   WP_004851151.1    Uniprot ID   -
Organism   Coprococcus eutactus strain ATCC 27759     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1411762..1422826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQ536_RS06025 (NQ536_06025) rsmD 1412061..1412627 (+) 567 WP_022059054.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  NQ536_RS06030 (NQ536_06030) coaD 1412620..1413108 (+) 489 WP_004851159.1 pantetheine-phosphate adenylyltransferase -
  NQ536_RS06035 (NQ536_06035) - 1413139..1413873 (+) 735 WP_004851157.1 hypothetical protein -
  NQ536_RS06040 (NQ536_06040) - 1413890..1414843 (-) 954 WP_044997996.1 hypothetical protein -
  NQ536_RS06045 (NQ536_06045) - 1414937..1416241 (-) 1305 WP_004851154.1 nucleotidyltransferase family protein -
  NQ536_RS06050 (NQ536_06050) recA 1416762..1417826 (+) 1065 WP_004851151.1 recombinase RecA Machinery gene
  NQ536_RS06055 (NQ536_06055) - 1417846..1418487 (+) 642 WP_004851149.1 regulatory protein RecX -
  NQ536_RS06060 (NQ536_06060) rny 1418692..1420245 (+) 1554 WP_004851147.1 ribonuclease Y -
  NQ536_RS06065 (NQ536_06065) - 1420346..1420882 (+) 537 WP_004851146.1 NUDIX hydrolase -
  NQ536_RS06070 (NQ536_06070) xerD 1421114..1421992 (+) 879 WP_004851144.1 site-specific tyrosine recombinase XerD -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37895.20 Da        Isoelectric Point: 5.0540

>NTDB_id=715777 NQ536_RS06050 WP_004851151.1 1416762..1417826(+) (recA) [Coprococcus eutactus strain ATCC 27759]
MASNSINSVNKDDKKKALDAAIAQIEKQYGKGSVMKLGDSNANMNIDVIPTGSLSLDIALGLGGIPRGRIIEVFGPESSG
KTTVALHIVAEIQKRGGIAGFIDAEHALDPTYAKNIGVDIDNLYISQPDCGEQALEITETMVRSGAVDVVIVDSVAALVP
KAEIDGEMGDSHMGLHARLMSQALRKLTAVVSKTNCVVIFINQLREKVGVVFGNPEVTTGGRALKFYASVRLDVRRIDTL
RQGGEIVGNRTRVKIVKNKVAPPFKEAEFDIVFGKGISKVGDILDLAVANDIVDKSGAWYAYNGNKIGQGRENAKMYLEN
NETICSEIEQKVREILGVAGDGAGTTEPAENEEE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=715777 NQ536_RS06050 WP_004851151.1 1416762..1417826(+) (recA) [Coprococcus eutactus strain ATCC 27759]
ATGGCAAGTAATTCAATCAATAGCGTCAACAAAGACGATAAGAAAAAAGCTCTTGATGCAGCTATTGCACAGATAGAAAA
ACAGTATGGAAAAGGTTCAGTTATGAAGCTTGGGGATTCCAATGCAAACATGAATATAGATGTCATTCCAACGGGGTCGC
TCAGCCTTGATATTGCGCTTGGACTTGGTGGTATACCTAGGGGAAGGATAATAGAGGTGTTTGGTCCCGAATCAAGTGGT
AAGACGACGGTTGCACTGCATATCGTTGCAGAGATACAGAAGAGAGGTGGCATAGCAGGCTTCATAGATGCTGAGCATGC
CCTTGATCCTACATATGCCAAGAATATCGGAGTGGATATTGACAATTTGTACATATCACAGCCTGACTGCGGAGAGCAGG
CTCTTGAGATAACTGAGACTATGGTTAGATCGGGGGCTGTAGATGTTGTTATTGTAGACTCTGTGGCAGCCCTTGTACCT
AAGGCTGAGATAGATGGTGAGATGGGAGATTCCCACATGGGACTTCATGCAAGACTTATGTCACAGGCTCTCAGAAAGCT
CACAGCTGTTGTCAGCAAGACCAACTGTGTTGTTATATTTATCAACCAGCTCAGAGAGAAGGTTGGAGTTGTATTCGGCA
ATCCTGAGGTTACAACAGGTGGCCGTGCCCTTAAGTTCTATGCATCTGTCAGGCTTGATGTAAGACGTATCGATACCCTC
AGACAGGGCGGCGAGATAGTTGGCAACAGGACTCGTGTCAAGATAGTGAAGAATAAGGTTGCACCCCCATTCAAAGAGGC
AGAATTTGATATCGTGTTTGGTAAGGGTATCTCAAAGGTTGGAGATATACTTGATCTTGCCGTTGCAAATGATATCGTCG
ATAAGTCGGGCGCATGGTATGCGTATAACGGCAACAAGATAGGCCAGGGACGCGAGAATGCCAAAATGTATCTTGAGAAC
AATGAGACAATATGCTCAGAGATTGAGCAGAAGGTCAGAGAGATACTTGGCGTTGCTGGTGATGGCGCAGGCACTACAGA
GCCTGCTGAGAACGAAGAAGAGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

62.974

96.893

0.61
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.757

96.328

0.605
  recA Acinetobacter baylyi ADP1

62.281

96.61

0.602
  recA Pseudomonas stutzeri DSM 10701

62.353

96.045

0.599
  recA Bacillus subtilis subsp. subtilis str. 168

64.242

93.22

0.599
  recA Ralstonia pseudosolanacearum GMI1000

63.636

93.22

0.593
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.224

96.893

0.593
  recA Streptococcus mitis NCTC 12261

60.756

97.175

0.59
  recA Neisseria gonorrhoeae MS11

63.609

92.373

0.588
  recA Neisseria gonorrhoeae strain FA1090

63.609

92.373

0.588
  recA Neisseria gonorrhoeae MS11

63.609

92.373

0.588
  recA Streptococcus mitis SK321

60.465

97.175

0.588
  recA Glaesserella parasuis strain SC1401

62.538

93.503

0.585
  recA Helicobacter pylori strain NCTC11637

62.691

92.373

0.579
  recA Helicobacter pylori 26695

62.691

92.373

0.579
  recA Streptococcus pneumoniae Rx1

61.818

93.22

0.576
  recA Streptococcus pneumoniae TIGR4

61.818

93.22

0.576
  recA Streptococcus pneumoniae R6

61.818

93.22

0.576
  recA Streptococcus pneumoniae D39

61.818

93.22

0.576
  recA Vibrio cholerae strain A1552

62.769

91.808

0.576
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.769

91.808

0.576
  recA Lactococcus lactis subsp. cremoris KW2

61.261

94.068

0.576
  recA Streptococcus pyogenes NZ131

61.515

93.22

0.573
  recA Streptococcus mutans UA159

61.963

92.09

0.571
  recA Latilactobacillus sakei subsp. sakei 23K

61.094

92.938

0.568
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.752

91.243

0.545