Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NQ556_RS06795 Genome accession   NZ_CP102277
Coordinates   1382624..1383694 (+) Length   356 a.a.
NCBI ID   WP_044999002.1    Uniprot ID   A0A3R6FHM0
Organism   Coprococcus comes ATCC 27758     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1377624..1388694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQ556_RS06780 (NQ556_06780) - 1378701..1380752 (+) 2052 WP_008372305.1 DNA topoisomerase -
  NQ556_RS06785 (NQ556_06785) - 1380749..1381420 (+) 672 WP_008372303.1 UDP-N-acetylglucosamine pyrophosphorylase -
  NQ556_RS06790 (NQ556_06790) - 1381427..1382230 (+) 804 WP_022220120.1 MBL fold metallo-hydrolase -
  NQ556_RS06795 (NQ556_06795) recA 1382624..1383694 (+) 1071 WP_044999002.1 recombinase RecA Machinery gene
  NQ556_RS06800 (NQ556_06800) - 1383703..1384314 (+) 612 WP_055156726.1 regulatory protein RecX -
  NQ556_RS06805 (NQ556_06805) rny 1384387..1385937 (+) 1551 WP_008372294.1 ribonuclease Y -
  NQ556_RS06810 (NQ556_06810) - 1386118..1386657 (+) 540 WP_008372292.1 NUDIX hydrolase -
  NQ556_RS06815 (NQ556_06815) - 1386723..1387265 (+) 543 WP_022220117.1 hypothetical protein -
  NQ556_RS06820 (NQ556_06820) - 1387363..1388670 (-) 1308 WP_173699958.1 oligosaccharide flippase family protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38442.79 Da        Isoelectric Point: 4.7536

>NTDB_id=715755 NQ556_RS06795 WP_044999002.1 1382624..1383694(+) (recA) [Coprococcus comes ATCC 27758]
MNDENKKKALDAAIAKLEKDFGKGAVMKLGDPAAQVHVETVPTGSLSLDLALGVGGVPKGRIIEIYGPESSGKTTVALHM
IAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDELYISQPDSGDQALEITETMVRSGAIDIIVVDSVAALVPKQEIEGDM
GDTHVGLQARLMSQALRKLTPVISKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRMDVRRTETLKQGGEMVG
NHVRVKIVKNKIAPPFKEAEFDIMFGKGISREGDILDLATKIDLVNKSGAWYAYNGEKIGQGRENAKSYLTAHPEIMEEI
EEKVRAHYGIGAEGQEAEEPAQAAPADAEEVMDEEE

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=715755 NQ556_RS06795 WP_044999002.1 1382624..1383694(+) (recA) [Coprococcus comes ATCC 27758]
ATGAATGATGAGAATAAAAAGAAAGCATTAGACGCAGCAATTGCAAAGCTTGAGAAAGATTTTGGTAAGGGAGCAGTTAT
GAAGCTGGGTGATCCGGCGGCACAGGTGCATGTTGAGACGGTTCCGACCGGTTCTCTGAGTCTGGATCTGGCACTTGGTG
TTGGCGGCGTTCCGAAAGGACGTATTATTGAAATTTATGGACCTGAATCAAGTGGTAAGACGACAGTTGCATTACATATG
ATCGCAGAAGTACAGAAAAGAGGCGGCATTGCGGGATTTATCGATGCAGAGCATGCACTGGATCCGGTATATGCGAAGAA
TATCGGTGTAGATATTGATGAACTTTACATTTCACAGCCAGACAGCGGAGATCAGGCATTGGAGATCACTGAGACAATGG
TACGTTCCGGTGCGATTGACATTATCGTAGTCGATTCTGTTGCAGCACTTGTTCCGAAGCAGGAGATTGAGGGTGATATG
GGTGATACACATGTAGGTCTGCAGGCAAGACTGATGTCACAGGCACTCAGAAAGCTGACACCGGTTATCAGTAAATCAAA
CTGTGTTGTAATCTTTATCAACCAGCTGCGTGAGAAGGTTGGCGTTATGTTCGGTAATCCGGAGACAACAACGGGTGGAC
GGGCACTGAAGTTCTATTCATCTGTCCGTATGGATGTCCGCAGAACTGAGACTCTGAAGCAGGGCGGAGAGATGGTTGGT
AACCATGTCCGCGTGAAGATCGTGAAGAATAAAATTGCACCTCCGTTCAAGGAAGCAGAATTTGATATCATGTTCGGAAA
AGGAATTTCCAGAGAAGGAGATATTCTGGATCTTGCGACGAAGATTGATCTGGTCAATAAGAGTGGTGCATGGTATGCAT
ACAACGGAGAAAAGATCGGTCAGGGACGTGAGAATGCAAAGTCTTATCTGACAGCACATCCGGAGATTATGGAAGAGATT
GAAGAAAAAGTCCGTGCGCATTACGGAATCGGTGCAGAAGGGCAGGAAGCAGAAGAACCGGCACAGGCTGCTCCGGCAGA
TGCTGAAGAAGTGATGGATGAGGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3R6FHM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

66.97

92.697

0.621
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.848

96.348

0.615
  recA Pseudomonas stutzeri DSM 10701

62.248

97.472

0.607
  recA Streptococcus mutans UA159

60.282

99.719

0.601
  recA Streptococcus pneumoniae Rx1

60.112

100

0.601
  recA Streptococcus pneumoniae D39

60.112

100

0.601
  recA Streptococcus pneumoniae R6

60.112

100

0.601
  recA Streptococcus pneumoniae TIGR4

60.112

100

0.601
  recA Streptococcus mitis SK321

60.057

99.157

0.596
  recA Streptococcus mitis NCTC 12261

60.057

99.157

0.596
  recA Acinetobacter baylyi ADP1

61.628

96.629

0.596
  recA Latilactobacillus sakei subsp. sakei 23K

64.242

92.697

0.596
  recA Glaesserella parasuis strain SC1401

59.773

99.157

0.593
  recA Neisseria gonorrhoeae strain FA1090

64.22

91.854

0.59
  recA Neisseria gonorrhoeae MS11

64.22

91.854

0.59
  recA Neisseria gonorrhoeae MS11

64.22

91.854

0.59
  recA Acinetobacter baumannii D1279779

65.015

90.73

0.59
  recA Vibrio cholerae strain A1552

64.706

90.73

0.587
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.706

90.73

0.587
  recA Streptococcus pyogenes NZ131

63.333

92.697

0.587
  recA Helicobacter pylori strain NCTC11637

62.5

92.135

0.576
  recA Helicobacter pylori 26695

62.5

92.135

0.576
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.5

92.135

0.576
  recA Lactococcus lactis subsp. cremoris KW2

61.702

92.416

0.57
  recA Ralstonia pseudosolanacearum GMI1000

63.694

88.202

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.568

91.011

0.542