Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DLM_RS13035 Genome accession   NZ_AP018823
Coordinates   2750808..2751857 (+) Length   349 a.a.
NCBI ID   WP_089085967.1    Uniprot ID   A0A3G9GEC0
Organism   Aquitalea magnusonii strain H3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2745808..2756857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLM_RS13015 (DLM_2588) - 2746168..2746506 (-) 339 WP_045846077.1 YbaB/EbfC family nucleoid-associated protein -
  DLM_RS13020 (DLM_2589) dnaX 2746508..2748469 (-) 1962 WP_089085970.1 DNA polymerase III subunit gamma/tau -
  DLM_RS13025 (DLM_2590) mltB 2748544..2749596 (-) 1053 WP_089085969.1 lytic murein transglycosylase B -
  DLM_RS13030 (DLM_2591) hrcA 2749631..2750647 (-) 1017 WP_089085968.1 heat-inducible transcriptional repressor HrcA -
  DLM_RS13035 (DLM_2592) recA 2750808..2751857 (+) 1050 WP_089085967.1 recombinase RecA Machinery gene
  DLM_RS13040 (DLM_2593) recX 2751873..2752331 (+) 459 WP_089085966.1 recombination regulator RecX -
  DLM_RS13045 (DLM_2595) alaS 2752583..2755216 (+) 2634 WP_089086341.1 alanine--tRNA ligase -
  DLM_RS13050 (DLM_2596) - 2755311..2756051 (+) 741 WP_089085965.1 substrate-binding periplasmic protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37676.10 Da        Isoelectric Point: 4.8780

>NTDB_id=71540 DLM_RS13035 WP_089085967.1 2750808..2751857(+) (recA) [Aquitalea magnusonii strain H3]
MASEDKSRALAAALAQIEKQFGKGSIMRMSDNQINENLQVVSTGSLGLDLALGVGGLPRGRVVEIYGPESSGKTTLCLQA
VAEAQKLGGTCAYIDAENALDPIYAQKLGVNVEDLLISQPDTGEQALEICDMLVRSSGVDVIVIDSVAALVPKAEIEGEM
GDSHVGLQARLMSQALRKLTANIKRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRVGGIKKADEVIG
NETRVKVVKNKVSPPFRQADFDILYGEGISREGEIIELGVKHGFIEKSGAWYAYNGQKIGQGKDNTREWLKSNPAIAKEI
EAKIREAVGIKVEITENDAEDMADDVLDV

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=71540 DLM_RS13035 WP_089085967.1 2750808..2751857(+) (recA) [Aquitalea magnusonii strain H3]
ATGGCGTCAGAAGACAAGAGCCGCGCATTGGCGGCAGCCCTTGCCCAGATCGAAAAGCAGTTCGGCAAGGGTTCGATCAT
GCGGATGAGCGACAACCAGATCAACGAAAACCTGCAAGTGGTATCCACCGGTTCGCTGGGCCTGGACCTGGCACTGGGTG
TCGGCGGCCTGCCGCGCGGTCGTGTCGTGGAAATCTACGGCCCGGAATCCTCCGGTAAAACCACCCTGTGTCTGCAGGCC
GTGGCCGAAGCCCAGAAGCTGGGCGGCACCTGCGCCTACATCGACGCGGAAAACGCGCTGGACCCGATCTACGCCCAGAA
GCTGGGCGTGAACGTGGAAGACTTGCTGATTTCCCAGCCGGACACCGGCGAGCAGGCACTGGAAATCTGCGACATGCTGG
TACGCTCCAGCGGTGTTGACGTCATCGTGATCGACTCGGTGGCCGCGCTGGTACCCAAGGCTGAAATCGAAGGCGAAATG
GGCGACAGCCACGTCGGCCTGCAAGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTGACCGCCAACATCAAGCGCACCAA
TACCCTGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAACCCAGAAACCACCACCGGCGGTA
ATGCGCTGAAGTTCTACGCTTCGGTACGCCTGGACATCCGCCGCGTTGGCGGCATCAAGAAGGCTGACGAGGTGATCGGT
AACGAAACCCGCGTCAAGGTGGTGAAGAACAAGGTATCGCCGCCGTTCCGCCAGGCCGATTTCGACATCCTGTACGGTGA
AGGCATCAGCCGCGAAGGTGAAATCATCGAGCTGGGCGTCAAGCACGGCTTCATTGAAAAATCCGGTGCCTGGTATGCCT
ACAACGGCCAGAAGATCGGCCAGGGCAAGGACAACACCCGTGAATGGCTGAAGTCCAACCCGGCCATCGCCAAGGAAATC
GAAGCCAAGATCCGCGAAGCCGTCGGCATCAAGGTGGAAATCACCGAAAACGACGCCGAAGACATGGCTGACGACGTACT
GGACGTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3G9GEC0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae strain FA1090

77.844

95.702

0.745
  recA Neisseria gonorrhoeae MS11

77.844

95.702

0.745
  recA Neisseria gonorrhoeae MS11

77.844

95.702

0.745
  recA Ralstonia pseudosolanacearum GMI1000

76.9

94.269

0.725
  recA Pseudomonas stutzeri DSM 10701

72.595

98.281

0.713
  recA Glaesserella parasuis strain SC1401

69.565

98.854

0.688
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.517

92.55

0.662
  recA Vibrio cholerae strain A1552

71.517

92.55

0.662
  recA Acinetobacter baylyi ADP1

69.969

92.55

0.648
  recA Acinetobacter baumannii D1279779

68.731

92.55

0.636
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.772

95.702

0.61
  recA Latilactobacillus sakei subsp. sakei 23K

60.172

100

0.602
  recA Helicobacter pylori 26695

62.651

95.129

0.596
  recA Helicobacter pylori strain NCTC11637

62.651

95.129

0.596
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.222

94.269

0.596
  recA Bacillus subtilis subsp. subtilis str. 168

63.497

93.41

0.593
  recA Streptococcus mutans UA159

58.48

97.994

0.573
  recA Streptococcus pneumoniae D39

57.061

99.427

0.567
  recA Streptococcus pneumoniae Rx1

57.061

99.427

0.567
  recA Streptococcus pneumoniae R6

57.061

99.427

0.567
  recA Streptococcus pneumoniae TIGR4

57.061

99.427

0.567
  recA Lactococcus lactis subsp. cremoris KW2

60

94.556

0.567
  recA Streptococcus mitis NCTC 12261

59.091

94.556

0.559
  recA Streptococcus mitis SK321

58.788

94.556

0.556
  recA Streptococcus pyogenes NZ131

58.788

94.556

0.556
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.492

93.696

0.539

Multiple sequence alignment