Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NQD60_RS01925 Genome accession   NZ_CP102085
Coordinates   448800..449900 (+) Length   366 a.a.
NCBI ID   WP_257100842.1    Uniprot ID   -
Organism   Mycoavidus sp. SF9855     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 443800..454900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQD60_RS01910 (NQD60_01910) - 445293..445406 (+) 114 WP_257100840.1 SapB/AmfS family lanthipeptide -
  NQD60_RS01915 (NQD60_01915) lanKC 445581..448271 (+) 2691 WP_257100841.1 class III lanthionine synthetase LanKC -
  NQD60_RS01920 (NQD60_01920) - 448426..448677 (+) 252 Protein_365 cytochrome b -
  NQD60_RS01925 (NQD60_01925) recA 448800..449900 (+) 1101 WP_257100842.1 recombinase RecA Machinery gene
  NQD60_RS01930 (NQD60_01930) recX 449940..450389 (+) 450 WP_257100843.1 recombination regulator RecX -
  NQD60_RS01935 (NQD60_01935) sucC 450441..451601 (+) 1161 WP_257100844.1 ADP-forming succinate--CoA ligase subunit beta -
  NQD60_RS01940 (NQD60_01940) sucD 451708..452589 (+) 882 WP_257100845.1 succinate--CoA ligase subunit alpha -
  NQD60_RS01945 (NQD60_01945) - 452636..453331 (+) 696 WP_257100846.1 TerC family protein -
  NQD60_RS01950 (NQD60_01950) - 453507..454097 (+) 591 WP_306438076.1 pilin -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 39146.84 Da        Isoelectric Point: 5.2055

>NTDB_id=714176 NQD60_RS01925 WP_257100842.1 448800..449900(+) (recA) [Mycoavidus sp. SF9855]
MEESKKGQAGLTAEKGKALAAALAQIEKQFGKGSIMRLGDGEVVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESS
GKTTLTLQVIAEMQKLGGTCAFIDAEHALDVQYAAKLGINVSDLLIAQPDTGEQALEITDALVRSSSVDLIVIDSVAALV
PKAEIEGDMGDSLPGLQARLMSQALRKLTGTINRTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGS
IKKADSVIGSETRVKVVKNKVAPPFREAIFDILYGEGISREGEIIDLGVQAKIVEKAGAWYSYNGERAGQGKDNAREYLR
ENPEIAREIENKVRISFGVVAMPATDETQENTETKTPKRQSAPTLG

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=714176 NQD60_RS01925 WP_257100842.1 448800..449900(+) (recA) [Mycoavidus sp. SF9855]
ATGGAAGAAAGCAAGAAAGGCCAAGCGGGCTTAACGGCTGAAAAAGGCAAAGCGCTTGCCGCTGCGCTGGCGCAGATTGA
AAAGCAATTTGGCAAAGGCTCAATCATGCGCCTGGGCGATGGGGAAGTGGTTGAAGATATTCAAGTAGTCTCTACTGGCT
CGCTGGGACTTGATATTGCGCTTGGGGTAGGCGGTTTGCCTCGCGGTCGTGTGGTTGAAATCTACGGGCCGGAATCCTCG
GGCAAAACCACTCTCACTTTACAAGTTATTGCTGAGATGCAAAAACTCGGTGGCACCTGCGCATTTATTGATGCAGAGCA
CGCGTTGGACGTCCAATATGCAGCAAAGCTTGGCATCAACGTGTCTGATCTCTTGATTGCACAGCCTGATACAGGTGAGC
AGGCGCTTGAGATTACAGATGCATTGGTGCGCTCGAGTTCGGTTGATTTAATTGTCATCGATTCCGTCGCCGCACTGGTA
CCCAAGGCTGAAATTGAGGGGGATATGGGCGACTCTTTGCCTGGCCTGCAAGCGCGCTTGATGTCACAGGCATTGCGTAA
GCTTACTGGGACCATTAACAGGACAAACTGCCTAGTCATTTTTATCAATCAAATTCGGATGAAAATAGGGGTGATGTTTG
GTAGTCCGGAAACCACAACGGGCGGCAATGCATTGAAGTTCTATGCATCAGTACGGCTTGATATCCGCCGCATTGGCTCA
ATCAAAAAAGCAGATTCGGTCATTGGCTCTGAGACGCGGGTGAAAGTGGTCAAAAATAAAGTTGCGCCGCCTTTTCGTGA
AGCCATATTTGACATCCTATATGGTGAAGGCATTTCGCGTGAAGGCGAAATCATTGACCTTGGCGTGCAAGCGAAAATTG
TTGAAAAGGCTGGCGCATGGTACAGCTATAATGGCGAGCGCGCTGGGCAGGGCAAAGACAATGCGCGTGAATATCTGCGT
GAAAATCCAGAGATTGCCCGTGAAATTGAAAACAAAGTTCGCATTTCATTTGGCGTGGTGGCCATGCCTGCAACGGATGA
AACTCAAGAAAACACTGAAACTAAAACGCCAAAGCGGCAATCAGCGCCAACTCTTGGGTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(17-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

84.136

96.448

0.811
  recA Neisseria gonorrhoeae strain FA1090

70.115

95.082

0.667
  recA Neisseria gonorrhoeae MS11

70.115

95.082

0.667
  recA Neisseria gonorrhoeae MS11

70.115

95.082

0.667
  recA Pseudomonas stutzeri DSM 10701

75.625

87.432

0.661
  recA Glaesserella parasuis strain SC1401

66.391

99.18

0.658
  recA Acinetobacter baylyi ADP1

70.674

93.169

0.658
  recA Acinetobacter baumannii D1279779

72.5

87.432

0.634
  recA Vibrio cholerae strain A1552

71.875

87.432

0.628
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.875

87.432

0.628
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.118

92.896

0.596
  recA Helicobacter pylori 26695

63.265

93.716

0.593
  recA Helicobacter pylori strain NCTC11637

62.974

93.716

0.59
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.644

89.071

0.585
  recA Bacillus subtilis subsp. subtilis str. 168

64.22

89.344

0.574
  recA Streptococcus mutans UA159

59.429

95.628

0.568
  recA Streptococcus pneumoniae D39

58.475

96.721

0.566
  recA Streptococcus pneumoniae Rx1

58.475

96.721

0.566
  recA Streptococcus pneumoniae R6

58.475

96.721

0.566
  recA Streptococcus pneumoniae TIGR4

58.475

96.721

0.566
  recA Streptococcus mitis NCTC 12261

61.446

90.71

0.557
  recA Latilactobacillus sakei subsp. sakei 23K

61.261

90.984

0.557
  recA Streptococcus mitis SK321

61.145

90.71

0.555
  recA Streptococcus pyogenes NZ131

61.702

89.891

0.555
  recA Lactococcus lactis subsp. cremoris KW2

59.639

90.71

0.541
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.748

87.705

0.533