Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NM620_RS02600 Genome accession   NZ_CP101694
Coordinates   515422..516474 (+) Length   350 a.a.
NCBI ID   WP_256383658.1    Uniprot ID   -
Organism   Photobacterium toruni strain WD2103     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 510422..521474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NM620_RS02585 rpoS 510857..511849 (+) 993 WP_256383656.1 RNA polymerase sigma factor RpoS -
  NM620_RS02590 mutS 512005..514584 (-) 2580 WP_080175377.1 DNA mismatch repair protein MutS -
  NM620_RS02595 pncC 514799..515296 (+) 498 WP_256383657.1 nicotinamide-nucleotide amidase -
  NM620_RS02600 recA 515422..516474 (+) 1053 WP_256383658.1 recombinase RecA Machinery gene
  NM620_RS02605 kch 516698..517927 (+) 1230 WP_080175374.1 voltage-gated potassium channel protein -
  NM620_RS02610 alaS 518159..520780 (+) 2622 WP_080175373.1 alanine--tRNA ligase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37626.07 Da        Isoelectric Point: 4.8662

>NTDB_id=711576 NM620_RS02600 WP_256383658.1 515422..516474(+) (recA) [Photobacterium toruni strain WD2103]
MDDNKQKALAAALGQIEKQFGKGSIMKLGDNKTMDIETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEVIS
AAQKQGKTCAFIDAEHALDPIYAQKLGVDINELLVSQPDTGEQALEIVDALARSGAVDVIVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNE
TRIKVVKNKIAAPFKQAETQILYGQGFNRNGELIDLGVKNKLVEKAGAWYSYQGNKIGQGKANSCKYLVENPAIAAEIEK
KLRDLLLTPAVEDTDEKEIDKIDAEDGDAF

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=711576 NM620_RS02600 WP_256383658.1 515422..516474(+) (recA) [Photobacterium toruni strain WD2103]
ATGGACGACAACAAGCAGAAGGCTCTTGCCGCAGCGTTAGGCCAGATTGAGAAGCAGTTCGGTAAAGGTTCAATTATGAA
ATTGGGCGATAATAAAACAATGGATATCGAAACTATTTCGACTGGTTCATTGTCTCTTGATATCGCACTAGGTGCTGGTG
GCTTACCAATGGGTCGTATCGTGGAAATCTACGGTCCAGAATCATCAGGTAAAACAACACTGACACTTGAAGTTATCTCG
GCAGCTCAGAAGCAAGGTAAAACATGTGCATTTATTGATGCTGAGCATGCCCTTGATCCTATTTATGCTCAGAAGTTAGG
CGTTGATATTAATGAATTATTAGTGTCTCAACCTGATACTGGTGAGCAAGCTTTAGAAATCGTTGATGCACTAGCACGTT
CAGGTGCAGTTGACGTTATCGTTGTTGACTCTGTTGCAGCCTTAACACCAAAAGCTGAAATTGAAGGTGAAATGGGTGAC
TCTCATATGGGTCTGCAAGCACGTATGCTATCGCAAGCAATGCGTAAACTAACCGGTAACCTTAAACAATCGAATTGCAT
GTGTATCTTCATTAACCAGATTCGTATGAAGATTGGTGTAATGTTTGGTAATCCCGAAACCACAACGGGTGGTAATGCAT
TGAAGTTCTATGCTTCTGTTCGTCTTGATATTCGTCGTACTGGCGCAATTAAAGATGGTGATGAAGTGGTTGGTAACGAA
ACCCGTATTAAAGTGGTTAAGAACAAAATTGCGGCACCGTTTAAACAAGCTGAAACGCAAATTCTTTATGGCCAAGGTTT
TAACCGTAATGGTGAATTGATTGATCTTGGTGTAAAAAATAAATTAGTTGAAAAAGCGGGTGCTTGGTATAGCTATCAAG
GCAATAAGATTGGTCAAGGTAAAGCAAATTCTTGCAAATATCTTGTTGAAAACCCTGCAATTGCTGCTGAAATCGAAAAG
AAATTACGCGATTTACTACTAACGCCAGCTGTTGAAGATACTGACGAAAAAGAGATCGACAAAATAGATGCTGAAGATGG
CGATGCTTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

89.058

94

0.837
  recA Vibrio cholerae O1 biovar El Tor strain E7946

89.058

94

0.837
  recA Pseudomonas stutzeri DSM 10701

73.487

99.143

0.729
  recA Acinetobacter baylyi ADP1

73.607

97.429

0.717
  recA Acinetobacter baumannii D1279779

72.965

98.286

0.717
  recA Glaesserella parasuis strain SC1401

66.761

100

0.671
  recA Ralstonia pseudosolanacearum GMI1000

70.122

93.714

0.657
  recA Neisseria gonorrhoeae MS11

69.632

93.143

0.649
  recA Neisseria gonorrhoeae MS11

69.632

93.143

0.649
  recA Neisseria gonorrhoeae strain FA1090

69.632

93.143

0.649
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64

92.857

0.594
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.631

94.571

0.583
  recA Bacillus subtilis subsp. subtilis str. 168

63.24

91.714

0.58
  recA Helicobacter pylori strain NCTC11637

61.231

92.857

0.569
  recA Streptococcus mutans UA159

58.017

98

0.569
  recA Helicobacter pylori 26695

60.923

92.857

0.566
  recA Streptococcus pneumoniae R6

61.3

92.286

0.566
  recA Streptococcus pneumoniae TIGR4

61.3

92.286

0.566
  recA Streptococcus pneumoniae Rx1

61.3

92.286

0.566
  recA Streptococcus pneumoniae D39

61.3

92.286

0.566
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.802

92.571

0.563
  recA Streptococcus mitis SK321

60.681

92.286

0.56
  recA Streptococcus mitis NCTC 12261

60.681

92.286

0.56
  recA Streptococcus pyogenes NZ131

60

92.857

0.557
  recA Latilactobacillus sakei subsp. sakei 23K

60.125

91.714

0.551
  recA Lactococcus lactis subsp. cremoris KW2

57.895

92.286

0.534