Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NNQ28_RS16820 Genome accession   NZ_CP101599
Coordinates   3498503..3499567 (-) Length   354 a.a.
NCBI ID   WP_007730397.1    Uniprot ID   A0A9Q4T061
Organism   Cronobacter dublinensis strain CFSA A137     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3493503..3504567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NNQ28_RS16805 (NNQ28_16820) csrA 3494755..3494940 (-) 186 WP_000906486.1 carbon storage regulator CsrA -
  NNQ28_RS16810 (NNQ28_16825) alaS 3495185..3497812 (-) 2628 WP_316351485.1 alanine--tRNA ligase -
  NNQ28_RS16815 (NNQ28_16830) recX 3497948..3498445 (-) 498 WP_316351487.1 recombination regulator RecX -
  NNQ28_RS16820 (NNQ28_16835) recA 3498503..3499567 (-) 1065 WP_007730397.1 recombinase RecA Machinery gene
  NNQ28_RS16825 (NNQ28_16840) pncC 3499656..3500153 (-) 498 WP_105736161.1 nicotinamide-nucleotide amidase -
  NNQ28_RS16830 (NNQ28_16845) mltB 3500294..3501376 (-) 1083 WP_038869409.1 lytic murein transglycosylase B -
  NNQ28_RS16835 (NNQ28_16850) - 3501492..3502214 (-) 723 WP_316351492.1 amino acid ABC transporter ATP-binding protein -
  NNQ28_RS16840 (NNQ28_16855) - 3502201..3502965 (-) 765 WP_032992063.1 amino acid ABC transporter permease -
  NNQ28_RS16845 (NNQ28_16860) - 3503035..3503802 (-) 768 WP_316351495.1 basic amino acid ABC transporter substrate-binding protein -
  NNQ28_RS16850 (NNQ28_16865) - 3503976..3504188 (+) 213 WP_032967592.1 KTSC domain-containing protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38190.55 Da        Isoelectric Point: 4.7525

>NTDB_id=710751 NNQ28_RS16820 WP_007730397.1 3498503..3499567(-) (recA) [Cronobacter dublinensis strain CFSA A137]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRTMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQRAGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVLVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGEEVVG
SETRVKVVKNKVAAPFKQAEFQILYGEGINFYGELVDLGVKHKLIEKAGAWYSYNGEKIGQGKANATNFLKENKPMADEI
EKKLREMLLNNQDSTPDFTVDDNDDGVAENNEEF

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=710751 NNQ28_RS16820 WP_007730397.1 3498503..3499567(-) (recA) [Cronobacter dublinensis strain CFSA A137]
ATGGCTATCGACGAAAACAAGCAGAAGGCGTTGGCGGCAGCACTCGGCCAGATTGAGAAGCAATTCGGCAAAGGCTCCAT
CATGCGTCTGGGTGAAGATCGCACCATGGATGTGGAAACGATCTCCACCGGCTCTCTCTCCCTGGACATCGCGCTGGGAG
CGGGCGGTCTGCCGATGGGGCGTATCGTGGAAATCTACGGCCCGGAATCTTCAGGTAAAACCACGCTGACGCTGCAGGTT
ATTGCCGCGGCACAGCGCGCCGGTAAAACCTGTGCGTTTATCGACGCAGAACACGCGCTCGACCCGGTTTACGCCCGTAA
GCTTGGCGTAGACATCGACAATCTGCTCTGCTCCCAGCCGGATACCGGCGAGCAGGCGCTGGAAATCTGTGACGCGCTGG
CGCGCTCTGGCGCGGTAGACGTGCTGGTTGTCGACTCCGTAGCGGCCCTGACGCCGAAAGCGGAAATCGAAGGCGAAATC
GGTGACTCTCACATGGGCCTCGCGGCGCGTATGATGAGCCAGGCGATGCGTAAGCTGGCCGGTAACCTGAAAAACTCCAA
CACGCTGCTTATCTTCATCAACCAGATCCGTATGAAGATTGGCGTGATGTTTGGTAACCCGGAAACCACCACCGGTGGTA
ACGCGCTGAAATTCTACGCTTCCGTGCGTCTCGACATCCGCCGTATCGGCGCGGTGAAAGAGGGCGAAGAGGTGGTGGGT
AGCGAAACCCGCGTGAAAGTGGTGAAAAACAAAGTCGCTGCGCCGTTTAAACAAGCTGAATTCCAGATCCTCTACGGTGA
AGGCATCAACTTCTACGGCGAGCTGGTTGACCTGGGCGTTAAGCACAAGCTGATTGAAAAAGCGGGCGCCTGGTATAGCT
ACAACGGCGAGAAGATCGGTCAGGGTAAAGCGAACGCGACCAACTTCCTCAAAGAGAACAAGCCGATGGCTGACGAAATT
GAGAAGAAGCTGCGCGAAATGCTGCTCAACAACCAGGACTCTACGCCTGACTTCACCGTCGACGACAATGACGACGGCGT
TGCAGAAAACAACGAAGAGTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

84.29

93.503

0.788
  recA Vibrio cholerae O1 biovar El Tor strain E7946

84.29

93.503

0.788
  recA Pseudomonas stutzeri DSM 10701

74.184

95.198

0.706
  recA Acinetobacter baylyi ADP1

71.594

97.458

0.698
  recA Acinetobacter baumannii D1279779

74.618

92.373

0.689
  recA Glaesserella parasuis strain SC1401

70.381

96.328

0.678
  recA Neisseria gonorrhoeae MS11

69.632

92.09

0.641
  recA Neisseria gonorrhoeae MS11

69.632

92.09

0.641
  recA Neisseria gonorrhoeae strain FA1090

69.632

92.09

0.641
  recA Ralstonia pseudosolanacearum GMI1000

71.383

87.853

0.627
  recA Helicobacter pylori strain NCTC11637

62.315

95.198

0.593
  recA Helicobacter pylori 26695

62.018

95.198

0.59
  recA Bacillus subtilis subsp. subtilis str. 168

63.863

90.678

0.579
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.963

91.525

0.576
  recA Streptococcus mutans UA159

62.769

91.808

0.576
  recA Streptococcus pneumoniae D39

62.848

91.243

0.573
  recA Streptococcus pneumoniae TIGR4

62.848

91.243

0.573
  recA Streptococcus pneumoniae Rx1

62.848

91.243

0.573
  recA Streptococcus pneumoniae R6

62.848

91.243

0.573
  recA Latilactobacillus sakei subsp. sakei 23K

62.154

91.808

0.571
  recA Streptococcus mitis NCTC 12261

62.229

91.243

0.568
  recA Lactococcus lactis subsp. cremoris KW2

62.229

91.243

0.568
  recA Streptococcus pyogenes NZ131

61.846

91.808

0.568
  recA Streptococcus mitis SK321

61.92

91.243

0.565
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.241

93.785

0.565
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

90.678

0.556