Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NMB96_RS15465 Genome accession   NZ_CP101417
Coordinates   3592110..3593144 (+) Length   344 a.a.
NCBI ID   WP_006453296.1    Uniprot ID   -
Organism   Xanthomonas hortorum strain jj2001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3587110..3598144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMB96_RS23410 - 3588893..3589078 (+) 186 WP_343237614.1 hypothetical protein -
  NMB96_RS15455 (NMB96_15440) ubiB 3589510..3591186 (+) 1677 WP_023903752.1 2-polyprenylphenol 6-hydroxylase -
  NMB96_RS15460 (NMB96_15445) lexA 3591296..3591937 (+) 642 WP_006453297.1 transcriptional repressor LexA -
  NMB96_RS15465 (NMB96_15450) recA 3592110..3593144 (+) 1035 WP_006453296.1 recombinase RecA Machinery gene
  NMB96_RS15470 (NMB96_15455) recX 3593428..3593916 (+) 489 WP_023903754.1 recombination regulator RecX -
  NMB96_RS15475 (NMB96_15460) alaS 3594017..3596665 (+) 2649 WP_255085206.1 alanine--tRNA ligase -
  NMB96_RS15480 (NMB96_15465) csrA 3596805..3597017 (+) 213 WP_003481884.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37150.74 Da        Isoelectric Point: 5.3743

>NTDB_id=710098 NMB96_RS15465 WP_006453296.1 3592110..3593144(+) (recA) [Xanthomonas hortorum strain jj2001]
MDENKKRALSAALSQIEKQFGKGSVMRMGDRAIEAVEVIPTGSLMLDIALGIGGLPKGRVVEIYGPEASGKTTLTLQAIA
ECQKKGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSSSVDIVVVDSVAALTPKAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNTLVVFINQLRHKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIG
NQTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVEAKLVEKAGAWYSYGEERIGQGKDNARTYLRDNPQVAIKL
EAELREKFQPAEAPREAGDDAEKE

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=710098 NMB96_RS15465 WP_006453296.1 3592110..3593144(+) (recA) [Xanthomonas hortorum strain jj2001]
ATGGATGAGAACAAAAAGCGCGCCCTTTCCGCAGCACTGAGCCAGATCGAAAAGCAATTCGGCAAGGGTTCGGTCATGCG
CATGGGCGACCGCGCCATCGAGGCGGTCGAAGTCATTCCAACCGGTTCGTTGATGCTGGATATCGCACTCGGCATCGGCG
GTCTGCCCAAGGGGCGCGTGGTCGAAATCTACGGGCCGGAAGCCTCGGGCAAGACCACCCTGACCCTGCAGGCGATCGCC
GAATGCCAGAAGAAGGGCGGCACCGCAGCCTTCATCGATGCCGAGCATGCGCTGGACCCGATCTATGCCGCCAAGCTGGG
CGTCAACGTCGACGACCTGCTGCTGTCGCAGCCCGATACCGGTGAGCAGGCGCTGGAAATCGCCGACATGCTGGTACGTT
CGAGCTCGGTGGACATCGTGGTGGTCGACTCGGTCGCCGCGCTGACCCCGAAGGCAGAAATCGAAGGCGAGATGGGCGAC
CAGCTGCCGGGTCTGCAGGCACGTCTGATGAGCCAGGCGCTGCGCAAGCTGACCGGCAACATCAAGCGCTCCAACACCCT
GGTGGTCTTCATCAACCAACTGCGCCACAAGATCGGCGTGATGATGCCGGGCCAGAGCCCGGAAGTGACCACCGGCGGCA
ATGCGCTGAAGTTCTACGCCTCGGTGCGTCTGGATATCCGTCGTATCGGCGCGATCAAGAAGGGCGATGAAATCATCGGC
AATCAGACCAAGATCAAGGTGGTCAAGAACAAGCTGGCGCCTCCGTTCAAGCAGGTCGTGACTGAAATCCTCTACGGCGA
AGGCATCAGCCGCGAGGGCGAATTGATCGATATGGGCGTGGAAGCCAAGCTGGTCGAGAAGGCCGGTGCCTGGTACAGCT
ACGGCGAAGAGCGCATCGGCCAGGGCAAGGACAATGCGCGTACCTATCTGCGCGATAACCCGCAGGTTGCGATCAAGCTG
GAAGCCGAGCTGCGCGAGAAGTTCCAGCCCGCCGAAGCGCCGCGTGAAGCAGGCGACGACGCCGAGAAGGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

69.883

99.419

0.695
  recA Acinetobacter baylyi ADP1

69.186

100

0.692
  recA Ralstonia pseudosolanacearum GMI1000

74.76

90.988

0.68
  recA Acinetobacter baumannii D1279779

71.037

95.349

0.677
  recA Vibrio cholerae strain A1552

70.245

94.767

0.666
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.245

94.767

0.666
  recA Glaesserella parasuis strain SC1401

64.535

100

0.645
  recA Neisseria gonorrhoeae MS11

67.791

94.767

0.642
  recA Neisseria gonorrhoeae MS11

67.791

94.767

0.642
  recA Neisseria gonorrhoeae strain FA1090

67.791

94.767

0.642
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.575

97.093

0.608
  recA Latilactobacillus sakei subsp. sakei 23K

61.377

97.093

0.596
  recA Bacillus subtilis subsp. subtilis str. 168

62.462

94.477

0.59
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.722

92.151

0.587
  recA Helicobacter pylori strain NCTC11637

60.241

96.512

0.581
  recA Streptococcus pneumoniae Rx1

60.671

95.349

0.578
  recA Streptococcus mitis SK321

60.671

95.349

0.578
  recA Streptococcus pneumoniae TIGR4

60.671

95.349

0.578
  recA Streptococcus pneumoniae R6

60.671

95.349

0.578
  recA Streptococcus pneumoniae D39

60.671

95.349

0.578
  recA Helicobacter pylori 26695

59.94

96.512

0.578
  recA Streptococcus pyogenes NZ131

60.303

95.93

0.578
  recA Streptococcus mitis NCTC 12261

60.366

95.349

0.576
  recA Streptococcus mutans UA159

60

95.93

0.576
  recA Lactococcus lactis subsp. cremoris KW2

58.769

94.477

0.555
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.576

95.93

0.552